Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0296 ATTACCAAAATGCCCTCTCCCTTCGCGGCCTTTCTTCTCCTCCTCCTAGCCGTGGCTTCCTCAATTTCGTCATTCCACGACCCAGACCGGGAGGTTCAGTTGGCCCGGACCATAGTTATGGAGGCCAGAGACTCGGTCCGAGGCTCCGTGACCGGGACAGGTGAGTTAAAACGACGCCGCTTTGAACGGCGGAATTTTGTTGAGGCCGCGCTCGGTTATTGCACCAGGCTTTACGAGGAGGCCGACGCGCGGCTGGCGGAGCTGCTGTTCGGAGGAAATTATACGGCGGAAGATGCTCGGACGTGGATCAGCGCCGCCGTGGCTAATCATCGGAGTTGTACGGACGGCCTGGAAGAGGTCGGAGCTGCGGCGGATAGGAAGAATAATTTGACTGCGTTACTCGCCGGAGCTCTGCGTTTATACGAGAAAATCGCCGCCGTGGAGGAGCGTAATGGATTGAAACGATGGGAGGAGCAGAAATTGACGAAAAATAGAGGAATCGACTTGGCGAAATGGAATCCGGCGACGTCGAAGGCGGACTATGTGGTGGCGATGGACGGCTCCGGCACACACAGAACCATAAACGACGCGGTGGCGGCTCTGGCGAGGAGTGGCCGGAGACGGCGGTCGGAGCGAGTGGTGATTTACGTGAAAGCCGGAGTTTACAGGGAGAACGTGGAAATCGGGATGCAATTGAAGAATGTGTTTATTGTCGGCGACGGCGCCGACAGAACCACCATCACCGGCAGCCGCAACGTGCCGGACGGCGCCACCACTTACAGCTCAGCAACATTTGGCGTCTCCGGCGACGGATTTTGGGCAAGGGACATCACATTCGAGAACACCGCCGGGCCGGAAAAGCACCAGGCGGTGGCGCTGCGGGTAAATTCCGACCTCGCCGTCGTCTACCGCTGCACAATCAAAGGCTACCAGGACTCCCTCTTCCTCCACTCCCTCCGCCAATTCTACCGCGACTGCCGCATATACGGCACCGTCGATTTCATCTTCGGAAACTCCGCCGCCGTCCTCCAGAACTGCGAAATCTTCGTCCGGCGGCCGATGCGCCACCAAGCCAACATGATCACCGCCCATGGCCGCGACGATCCGGCGGAGAACACCGGAATTTCGATCCACGGCTCGCGAGTCAGGGCGGCACCGGAATTCGCCGCCGTACAGGGCGAATTCAGAACGTTCCTCGGCCGGCCGTGGAAGCGGTACTCGAGGACGGTGGTTATGGCGACGGATCTGGAGGGATTGATCGATCCGCGTGGGTGGGGAGAATGGGAAGGGGATTTTCCTCTGTCGACTCTGTTTTATGGTGAATATAAGAACACCGGCCGCGGTTCTTCCACTCGATTTAGGGTTAATTGGCCCGGATTTCACATTTTTCGGGGCGATCTGGAGGCCGGAAGGTTTACGGTCGGCGGTTTTCTCCACGGCCGCGATTGGATTCCGGTGACCGGAGTGCCCTTCCAGGCAGGAATTCGAGCTCTTGGTCCTCTGCTTGAAAATATATATATATACACGTGGAATTTGAATAGCGATAAAAATCATAATGAGAGGGACTAA 1569 57.43 ITKMPSPFAAFLLLLLAVASSISSFHDPDREVQLARTIVMEARDSVRGSVTGTGELKRRRFERRNFVEAALGYCTRLYEEADARLAELLFGGNYTAEDARTWISAAVANHRSCTDGLEEVGAAADRKNNLTALLAGALRLYEKIAAVEERNGLKRWEEQKLTKNRGIDLAKWNPATSKADYVVAMDGSGTHRTINDAVAALARSGRRRRSERVVIYVKAGVYRENVEIGMQLKNVFIVGDGADRTTITGSRNVPDGATTYSSATFGVSGDGFWARDITFENTAGPEKHQAVALRVNSDLAVVYRCTIKGYQDSLFLHSLRQFYRDCRIYGTVDFIFGNSAAVLQNCEIFVRRPMRHQANMITAHGRDDPAENTGISIHGSRVRAAPEFAAVQGEFRTFLGRPWKRYSRTVVMATDLEGLIDPRGWGEWEGDFPLSTLFYGEYKNTGRGSSTRFRVNWPGFHIFRGDLEAGRFTVGGFLHGRDWIPVTGVPFQAGIRALGPLLENIYIYTWNLNSDKNHNERD 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2020479 2023492 + MC05g0275 Mch5g0296 687715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0296 522 PANTHER PECTINESTERASE 52 485 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch5g0296 522 Gene3D Invertase/pectin methylesterase inhibitor family protein 18 145 IPR035513 -
Mch5g0296 522 Pfam Pectinesterase 181 480 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch5g0296 522 SUPERFAMILY Pectin lyase-like 175 494 IPR011050 -
Mch5g0296 522 FunFam Pectinesterase 174 495 - -
Mch5g0296 522 Gene3D - 174 495 IPR012334 -
Mch5g0296 522 ProSitePatterns Pectinesterase signature 2. 328 337 IPR033131 -
Mch5g0296 522 Pfam Plant invertase/pectin methylesterase inhibitor 20 132 IPR006501 GO:0004857(InterPro)
Mch5g0296 522 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 63 132 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0296 Mch-Chr5:2020479 Mch6g2635 Mch-Chr6:28118747 3.17E-132 dispersed
Mch5g0295 Mch-Chr5:2003281 Mch5g0296 Mch-Chr5:2020479 8.27E-118 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0296 K01051 - csv:101217635 658.292