Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0316 ATGGAAGAGAGAGAAGCCATAAGTGGGGGAGTAACAGTGATAGGAGCCGAAGCCCCGTCGGCTTATCACGTGGCTCCGAGAACCGATAACCCGGCGCCGGCTGCCGGCGGCGGTTCGCCCACCGTCGCCGCCTCGCCGGTCAGCGTGGGGCTACCCGGGAGTGGGACCACGGGGAAAAAGAAGCGGGGGAGACCAAGAAAATACGGACCAGATGGAACGGTCACCATGGCATTGTCGCCATTGCCGCTTTCTTCCTCAGCTCCGGCGGCCGGCGGCTTCTCCATCACCAAGCGGGGGAAGGGCCGGCTCGGCGGCTCCGAGTACAAGCACCACAAGAAAATGGGAATGGAATATATAGGTGAATGGAATGCGTGTGCTGTTGGTATGAATTTTATGCCCCATATCATCACGGTCAATGCTGGCGAGGATGTCACTATGAAGATCATATCATTTTCCCAACAAGGTCCTCGAGCCATCTGCATTCTTTCTGCTAATGGAGTAATTTCTAATGTCACACTTAGGCAGCCCGATTCTTCGGGCGGTACTTTAACGTACGAGGGTCGTTTCGAGATACTTTCCTTGTCCGGATCATTCATGCCTACTGAAAATCAAGGAACGAGAAGCAGGTCAGGTGGGATGAGCGTCTCCCTGGCAAGCCCCGATGGTCGTGTCGTCGGGGGAGGGGTAGCTGGTTTACTCGTAGCAGCAGGCCCTGTTCAGGTTGTGATAGGGAGTTTTCTACCAACTAGCCAACAGGAGCATAAGGTAAAGAAACAGAAGCCTGATACGGTACCAGCTACAGCACCTGTTGCAGTCCCAAGCACGACACCAGCCACCACTGCACCGACTTCCAATGCCGATACAGATGACAGTATGAACGGAAACGGGCTGCAAAATACCAGCTCCCTCAAACCAGCTACTTTCGCTTCTTCGACTTTCCAAAGAGACAACTGGGGTGCGAACTCTGCTGTTCATTCCTTGCAGGAGCCGAGAAATTCCGCAACCGACATCAATATATCGCTACCGGGCTAA 1032 54.26 MEEREAISGGVTVIGAEAPSAYHVAPRTDNPAPAAGGGSPTVAASPVSVGLPGSGTTGKKKRGRPRKYGPDGTVTMALSPLPLSSSAPAAGGFSITKRGKGRLGGSEYKHHKKMGMEYIGEWNACAVGMNFMPHIITVNAGEDVTMKIISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAAGPVQVVIGSFLPTSQQEHKVKKQKPDTVPATAPVAVPSTTPATTAPTSNADTDDSMNGNGLQNTSSLKPATFASSTFQRDNWGANSAVHSLQEPRNSATDINISLPG 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2139756 2144484 - MC05g_new0029 Mch5g0316 687735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0316 343 MobiDBLite consensus disorder prediction 22 72 - -
Mch5g0316 343 MobiDBLite consensus disorder prediction 253 308 - -
Mch5g0316 343 CDD DUF296 133 223 IPR005175 -
Mch5g0316 343 MobiDBLite consensus disorder prediction 269 308 - -
Mch5g0316 343 Gene3D - 133 262 - -
Mch5g0316 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 133 246 IPR005175 -
Mch5g0316 343 ProSiteProfiles PPC domain profile profile. 127 271 IPR005175 -
Mch5g0316 343 MobiDBLite consensus disorder prediction 321 343 - -
Mch5g0316 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 253 - -
Mch5g0316 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 294 IPR039605 GO:0003680(InterPro)
Mch5g0316 343 FunFam AT-hook motif nuclear-localized protein 1-like 133 263 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0285 Mch-Chr2:2141150 Mch5g0316 Mch-Chr5:2139756 1.05E-24 dispersed
Mch5g0316 Mch-Chr5:2139756 Mch6g2581 Mch-Chr6:27682019 3.60E-111 dispersed
Mch5g0316 Mch-Chr5:2139756 Mch5g0321 Mch-Chr5:2192294 2.53E-23 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0316 - - - 0.0