Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0318 ATGAGCACGGGGCGCAGTGGAGGAAGTTGCACAGGCGGCAATGGGGGAGGCAGTGGACCTTGCGGTGCGTGTAAGTTTCTGCGGAGGAAGTGTCTGCCTGGGTGTATATTTGCACCCTACTTCGACTCCGAACAGGGCACGGCTCATTTTGCAGCGGTGCACAAGGTGTTCGGAGCCAGCAATGTATCGAAGCTGCTTTTACATATTCCAGAACACAAGCGGCTTGACGCTGCTATAACCATATGCTATGAAGCTCAAGCTCGGGTCAGAGAGCCAGTTCTTGGCTGTGTTGCTCATATCTTTGCTCTTCAAGAACAGGCAGCGAGGTTGCGAGCTGAGCTCTCATACTTACAAGCATACCTAGCAGCATCCGAGCTTCGAAGACCCCAATCCAATCTACAGGCACAGCCACCACCTCTGATTAAGCCATCTCTACCCTCAATTTCAAACCTGCCATTAGATTCCCCCTCCTTGCCCGTTTCATCGGATCTTTCCCTACTGCTCGATCCTGTGGTGCAAGCTTCAGGATCAAAACCGCAGTCTCCATTCGAATCATGTCAAATTGGAAGCAACAATTTCCCATCCATGGCCGGCAGGGATCAACAACTCATTTACAAACAACTGTCCTCAATGCAGTGTATTGGTGCCTCCTTATTTCCATACCTCCCAAAACGAGCCTAA 681 50.81 MSTGRSGGSCTGGNGGGSGPCGACKFLRRKCLPGCIFAPYFDSEQGTAHFAAVHKVFGASNVSKLLLHIPEHKRLDAAITICYEAQARVREPVLGCVAHIFALQEQAARLRAELSYLQAYLAASELRRPQSNLQAQPPPLIKPSLPSISNLPLDSPSLPVSSDLSLLLDPVVQASGSKPQSPFESCQIGSNNFPSMAGRDQQLIYKQLSSMQCIGASLFPYLPKRA 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2165835 2168496 + MC05g0289 Mch5g0318 687737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0318 226 PANTHER LOB DOMAIN CONTAINING PROTEIN 17 137 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Mch5g0318 226 Pfam Lateral organ boundaries (LOB) domain 20 118 IPR004883 -
Mch5g0318 226 ProSiteProfiles LOB domain profile. 19 121 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0318 Mch-Chr5:2165835 Mch7g0755 Mch-Chr7:12182975 2.89E-48 dispersed
Mch5g0318 Mch-Chr5:2165835 Mch7g0754 Mch-Chr7:12166732 1.32E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43324 PF03195 LOB 4.30E-36 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0318 K21994 - csv:101216934 290.041