Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0321 CTTCCGCCGCCGTTCCTCTCAAGAGACCTCCACCTCCACTTCCTCCACCAAAACTCCGATCAACAACACAACGGCAACGGCGCCGCCGCCGTGGAACCCAGAGAGATGAGCTGCGGCGCCGCCGCAACAGACGTCGGCGAGGCCTCGCGGAGACCCCGCGGCCGCCCCGCAGGGTCGAAGAACAAGCCGAAGCCGCCGATGATCATAACACGTGACAGCGCCAACGCCCTCCGCTGCCACGTCATCGAAATTGCCAACGCCTCCGACGTCATCGAAACCCTCACCATCTTCACACGTCAGCGCCAACGTGGCATTTGCATTCTCACCGGCGCCGGTACCGTCTCCAACGTCACCCTCAAACAGCCGGCCTCTCCCGCCGGAGCCGTCATCTCTCTGCCGGGGAGATTCGAGATTCTTTCCCTGTCGGGCTCGTTTCTGCCGCCGCCGGCCCCGGCGGCGGCGTCCGGGCTGACCGTATACTTGTCCGGCGGGCAGGGGCAGGTGGTTGGAGGAAGCGTGGTGGGCCCACTTCTGACTTCGGGGCCGGTGGTGATTACTGCGGCTTCGTTCGGAAACGCGGCCTATGAGAGACTGCCGCTGGAGGAGGATGACGTGGCGGCGCCGCCACATGATGCCGGAAGTAGTCCGATTAGGTCGTCGGAAACCGCCGTGCAACAGCAACAATTTTTGCCGGAGCTTCATGGGATGGCGCCGCATCTTTTGAACACGTGTCAGTTGCCGACGGAACCCTACTGGGGCACAGGTCGTACTAATCCGCCATTT 783 63.35 LPPPFLSRDLHLHFLHQNSDQQHNGNGAAAVEPREMSCGAAATDVGEASRRPRGRPAGSKNKPKPPMIITRDSANALRCHVIEIANASDVIETLTIFTRQRQRGICILTGAGTVSNVTLKQPASPAGAVISLPGRFEILSLSGSFLPPPAPAAASGLTVYLSGGQGQVVGGSVVGPLLTSGPVVITAASFGNAAYERLPLEEDDVAAPPHDAGSSPIRSSETAVQQQQFLPELHGMAPHLLNTCQLPTEPYWGTGRTNPPF 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2192294 2193076 + MC05g0292 Mch5g0321 687740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0321 261 MobiDBLite consensus disorder prediction 37 68 - -
Mch5g0321 261 FunFam AT-hook motif nuclear-localized protein 77 205 - -
Mch5g0321 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 74 206 - -
Mch5g0321 261 ProSiteProfiles PPC domain profile profile. 74 211 IPR005175 -
Mch5g0321 261 CDD DUF296 78 146 IPR005175 -
Mch5g0321 261 MobiDBLite consensus disorder prediction 204 224 - -
Mch5g0321 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 26 219 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Mch5g0321 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 78 190 IPR005175 -
Mch5g0321 261 Gene3D - 77 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0321 Mch-Chr5:2192294 Mch7g0752 Mch-Chr7:12143320 1.61E-87 dispersed
Mch5g0316 Mch-Chr5:2139756 Mch5g0321 Mch-Chr5:2192294 2.53E-23 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0321 - - - 0.0