Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0327 CAGTCTGTTACTTTGCACACGAACCTCGGAGACATCAAGTGCGAGATTTTTTGCGATGAAGTTCCGAAGACTGCCGAGGCAAGTTCATCGTTCAATTTTTTGGCACTATGTGCAAGTGGTTACTATGATGGAACCATATTCCATCGAAATATTAAAGGTTTTATGATTCAAGGTGGAGATCCAACAGGCACGGGAAAAGGGGGAACCAGCATATGGGGTAAAAAGTTTAATGACGAGATAAGAGAGTCGCTCAAGCACAATGCAAGAGGAATACTATCAATGGCTAATAGTGGAGCTAATACAAATGGAAGCCAATTTTTTATAAGTTATGCAAAGCAGCCACATCTAAATGGATTATACACTGTATTTGGCAGAGTGATTCATGGGTTTGAAGTACTTGATATCATGGAAAAGACTCAAACTGGAACCGGAGATCGACCTCTTGCAGAGATCAGGCTCAATCGGGTTACGATACACGCCAATCCTCTTGCTGGCTAA 498 41.97 QSVTLHTNLGDIKCEIFCDEVPKTAEASSSFNFLALCASGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTSIWGKKFNDEIRESLKHNARGILSMANSGANTNGSQFFISYAKQPHLNGLYTVFGRVIHGFEVLDIMEKTQTGTGDRPLAEIRLNRVTIHANPLAG 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2233877 2236759 - MC05g0296 Mch5g0327 687746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0327 165 CDD Cyclophilin_PPIL3_like 2 158 - -
Mch5g0327 165 FunFam Peptidyl-prolyl cis-trans isomerase 1 165 - -
Mch5g0327 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 105 117 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 133 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 90 105 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 59 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 Gene3D - 1 165 IPR029000 -
Mch5g0327 165 SUPERFAMILY Cyclophilin-like 2 162 IPR029000 -
Mch5g0327 165 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 157 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 158 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Mch5g0327 165 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 42 59 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Mch5g0327 165 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 155 IPR044666 GO:0000413(PANTHER)|GO:0003755(PANTHER)|GO:0071013(PANTHER)
Mch5g0327 165 PIRSF Peptidylpro_ismrse 1 162 IPR024936 GO:0003755(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0652 Mch-Chr3:10946006 Mch5g0327 Mch-Chr5:2233877 1.94E-47 dispersed
Mch5g0327 Mch-Chr5:2233877 Mch5g1593 Mch-Chr5:16881180 2.38E-47 dispersed
Mch5g0327 Mch-Chr5:2233877 Mch1g1286 Mch-Chr1:15038709 7.46E-56 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0327 K12734 - csv:101211474 312.768