Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0328 ATGGAGACCAATTCCGCCGCCGTGGTCGTTAGCAATACCCCAAGCATCTCGCCGGAGAAACGCAACCGTTCAATCTTCGACGTCCCGCCGGACTTCTTCGACGCCTGTAAACTCCTTCGTTCTCCATACTCATACACCTCATCAACCGGCGGCAGCTACAGGAACAGCTCAAGCGCAGAAAACCCAGTCGATTCGGAGAATAACTCGAGCGATTTCAAAGAAAGTTCCGTCGCCCACAGATGGACCTGCAACACGTGCAAGGCCCAGTTCGAATCCCTCCTCGACCAGCGTTCGCACTTCAAATCCGACCTTCACCGGTTCAATGTGAAACTAAGCATTGCTGGAAAGAATATTGTGAAGGAGGATGATTTTGATGAGCTGACATCTGATTCTTTCAGAGACTTTGATGTGTCAAGTATTTCTGGATCAGAGGATGAAACAGAGAAGGAGGTTCACTCTCGGAATGAAGGGTCCAAGGGAACAAGCGACAATGTCAATAAGAAGAGGTTGTTTGTTCATCTTCGAACAGGCGAAAGAGTTTCGGTTTGGAAGTGTTTACTCATAAATGAGTCAGATAATGTTTCATATGAAGATGATAAAACATCTATCAGTAGTAGTGCCGTTTATGCACATTACCTTAGAGAGAATGAAGTCATAGCAAGATTGAAAAGTCTAAATCTTGAGCCAAGAGATGGCACCCGTTTGCGGATAGTATTGCTTGCAAGCGGTGGGCACTTCGCCGGTTGTGTTTTCGATGGGAACTCGGTTGTAGCCCATAAAACCTTTCACAGATATGTGGTGAGAGCCAAGTCTGGAAAGAAGCAATCATCAAAAGATGCTAGTGGCAAGACAATCAGTTCTGCTGGGGCTTCACTTCGTCGTCATAATGAACTGGCATTGAAGAAGGAAATTCAAGATCTCCTTGCTGCTTGGAAGTCCTATTTTAACGCTTCATCTTGCGTCTATATTTATGCTCCTTCAAACAATCGGCAATTGCTTTTTAATGGGGAAAAGCCATATTTTAGTGATCAGCACTCTGCTATTCGGAACATTCCGTTGACTGTTAGAAGGCCTACTTTGAAAGAAGCCCGGCGTGTTTATGAACAATTGGTACAAGTAGTTCATGAAGTAGATGAAAAGGAAATATCATCTACCAGTGAGCACAATTCACCGTTGAGTGCAGTTACAACAGACAATTGCATCCAAGATGTAAGCAAAGAGAAAGTCATTGGAGATTTGGAAAAGGATGCTCGTACGCATACCGTAGAATCTGTTGAATGCGCCATAACTAGTGAGAGTGAAAGTGAAGTTATTTGTAGAACTACCCCTTTGCATGAAGCATCAGAGTCTGGAAATGCAGATAAGGTTTTGGAACTCCTTGAACAGGGTCTTGATCCTTGCATCAAAGACGAAAGAGGACGTACGCCGTACATGTTGGCAAGTGAGAAGGAAGTCCGGAATAACTTCAGAAGGTTCATGGCTTCAAACCTTGATAAATGGGATTGGAATGCTGCTAAGGTGCCCAGTGCATTAACTAAGGAAATGGAAGAATCTCAAGCTGCTAAGCAGGCAGAAAAAGAGGCCAAGCGAAAAGCAAGAGCAAAGGAATTGAAGAAATTAAAGAAGGAAAAAGCCAAGAAAGCACAGGCACAAGCAGCTGAATCTCAAAAAGCTGTGAAGGTGGAGCAGAGCAGAGCTATCGGCTCTGTTTCGAATAATCGGGCTGAATCAACAAGTGGGAAACAGATTACTCAAGAGATGGGACAGGCTGCTGAACGGGAAAAGAGAGCAGCAGCTGCTGAGAGGAGAATCGCCGCAGCCGCAGCCACCGATGTTTCCTCATCGACTACTCCGAACAGCTCGCAGACTAAATCCGGGGAGGCGGGGGATGTCAACTGTTCCTGTTGCAGTACGTCACTGGCTGGTAAAGTTCCTTTCCACAGATACAACTACAAATATTGCAGCTCAACATGCATGCATGTACACAGAGAGGTTCTTGAAGGAAACTAG 2010 45.27 METNSAAVVVSNTPSISPEKRNRSIFDVPPDFFDACKLLRSPYSYTSSTGGSYRNSSSAENPVDSENNSSDFKESSVAHRWTCNTCKAQFESLLDQRSHFKSDLHRFNVKLSIAGKNIVKEDDFDELTSDSFRDFDVSSISGSEDETEKEVHSRNEGSKGTSDNVNKKRLFVHLRTGERVSVWKCLLINESDNVSYEDDKTSISSSAVYAHYLRENEVIARLKSLNLEPRDGTRLRIVLLASGGHFAGCVFDGNSVVAHKTFHRYVVRAKSGKKQSSKDASGKTISSAGASLRRHNELALKKEIQDLLAAWKSYFNASSCVYIYAPSNNRQLLFNGEKPYFSDQHSAIRNIPLTVRRPTLKEARRVYEQLVQVVHEVDEKEISSTSEHNSPLSAVTTDNCIQDVSKEKVIGDLEKDARTHTVESVECAITSESESEVICRTTPLHEASESGNADKVLELLEQGLDPCIKDERGRTPYMLASEKEVRNNFRRFMASNLDKWDWNAAKVPSALTKEMEESQAAKQAEKEAKRKARAKELKKLKKEKAKKAQAQAAESQKAVKVEQSRAIGSVSNNRAESTSGKQITQEMGQAAEREKRAAAAERRIAAAAATDVSSSTTPNSSQTKSGEAGDVNCSCCSTSLAGKVPFHRYNYKYCSSTCMHVHREVLEGN 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2237928 2242850 - MC05g0297 Mch5g0328 687747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0328 669 Gene3D - 404 559 IPR036770 -
Mch5g0328 669 ProSitePatterns Zinc finger C2H2 type domain signature. 83 105 IPR013087 -
Mch5g0328 669 PANTHER ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 19 667 IPR047139 GO:0030433(PANTHER)
Mch5g0328 669 MobiDBLite consensus disorder prediction 539 630 - -
Mch5g0328 669 Coils Coil 360 380 - -
Mch5g0328 669 MobiDBLite consensus disorder prediction 139 162 - -
Mch5g0328 669 Coils Coil 511 565 - -
Mch5g0328 669 MobiDBLite consensus disorder prediction 138 162 - -
Mch5g0328 669 SUPERFAMILY beta-beta-alpha zinc fingers 72 112 IPR036236 -
Mch5g0328 669 Pfam Bacteroidetes VLRF1 release factor 237 373 IPR041175 -
Mch5g0328 669 SUPERFAMILY Ankyrin repeat 441 493 IPR036770 -
Mch5g0328 669 Pfam Vms1-associating treble clef domain 632 665 IPR041540 -
Mch5g0328 669 ProSiteProfiles Ankyrin repeat region circular profile. 439 471 - -
Mch5g0328 669 MobiDBLite consensus disorder prediction 609 630 - -
Mch5g0328 669 MobiDBLite consensus disorder prediction 565 586 - -
Mch5g0328 669 ProSiteProfiles Ankyrin repeat profile. 439 471 IPR002110 GO:0005515(InterPro)
Mch5g0328 669 MobiDBLite consensus disorder prediction 46 71 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0328 K26089 - csv:101216211 1005.74