Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g0344 | ATGGTGAGAGGGAAAACGCAGATGAGGCGAATCGAGAATGCGACAAGTCGGCAAGTTACGTTCTCCAAACGACGGAACGGGCTGCTGAAGAAGGCTTTTGAGCTGTCGGTTCTTTGTGATGCCGAGGTTGCCCTCATCATCTACTCCTCCAGAGGGAAGCTCTATGAATTTGCCAGCTCAAGCATGCAAGCCACGGTGGGGCGCTATCTGAGGCATACAAAGGAAACCCATCATCTTCAACCATTAGTTCGTCAACATACTTTACAAACCGTTCAGCATGAGGCTGCAACTTTGGTGAAGGAAATAGAGTCACTTGAGGTTTCAAAGAGGAAACTGTTGGGAGAAGGTCTAGGATCAAGCTCCTGTGAAGAACTCCATCAAATAGAACAACAGCTAGAAAGGAGCTTAACCAATGTCAGAGCAAGAAAGCACCAGGTTTACAGAGAACAGATTGAACAACTAGGAGAAAAGGAGAAGTTTTTGGCAGCTGAAAATGCAAAGCTAGGCGAAAAGTACTGTGTTCAACTTCACCATCGACAATCACCAAATGAACAAGGAGAGGTTTCGCCTCACCCCGAAAGCAGCTCGATTTCAGACGTCGAAACCGAGTTGTTCATCGGACCGCCCGAGTCGAGATCATTGAAGCGACGCCTTCCTTTGCAAACATGA | 669 | 47.38 | MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIYSSRGKLYEFASSSMQATVGRYLRHTKETHHLQPLVRQHTLQTVQHEAATLVKEIESLEVSKRKLLGEGLGSSSCEELHQIEQQLERSLTNVRARKHQVYREQIEQLGEKEKFLAAENAKLGEKYCVQLHHRQSPNEQGEVSPHPESSSISDVETELFIGPPESRSLKRRLPLQT | 222 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 2347536 | 2352780 | - | MC05g0309 | Mch5g0344 | 687763 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g0344 | 222 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | MobiDBLite | consensus disorder prediction | 179 | 222 | - | - | |
| Mch5g0344 | 222 | ProSiteProfiles | K-box domain profile. | 88 | 182 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch5g0344 | 222 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 78 | - | - | |
| Mch5g0344 | 222 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | Coils | Coil | 88 | 108 | - | - | |
| Mch5g0344 | 222 | MobiDBLite | consensus disorder prediction | 179 | 201 | - | - | |
| Mch5g0344 | 222 | CDD | MADS_MEF2_like | 3 | 77 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
| Mch5g0344 | 222 | Pfam | K-box region | 85 | 171 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
| Mch5g0344 | 222 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 183 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
| Mch5g0344 | 222 | Gene3D | - | 14 | 93 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
| Mch5g0344 | 222 | SUPERFAMILY | SRF-like | 3 | 79 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g0344 | Mch-Chr5:2347536 | Mch7g0741 | Mch-Chr7:12030179 | 2.89E-74 | dispersed | |
| Mch10g0200 | Mch-Chr10:1190205 | Mch5g0344 | Mch-Chr5:2347536 | 3.17E-48 | wgd | |
| Mch5g0344 | Mch-Chr5:2347536 | Mch7g0724 | Mch-Chr7:11860623 | 1.78E-14 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 43326 | PF01486 | K-box | 9.40E-25 | No_clan | Mch | TF |
Pathway information