Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0361 GGCGGCGGCGGCGGCGGCGGCTACGGTTGTCTTATGGCCTCCGGTGCAATTGCTCAGCCACGACTCGTCACTCACTACTCTTTCCCCAAATCCATGTTCTCTTCCCCCAGGCTCTCTCTCGCTCTCACGAATATCGATGGGCTCGGCGCGGGCGAGATGATTCCGGCGGACGGTTACGAGCCGAATGTTAGGAGGAGATGTCGGGAGGAGGAACCGGCGGAGAGCAGATCCGGCAGCGACGGCGGCGGCGGCGGCTCCGGCGACGATCAGGACGCCGCCGGCGAAAACCCTAGGAAGAAGAAGCGGTACCACCGCCACACTCCGCAGCAGATCCAAGAACTCGAAGCTATGTTCAAGGAGTGTCCCCATCCTGATGAGAAGCAGCGATTGGAGCTCAGTAGACGACTCTGTTTAGAAACGAAACAAGTAAAATTCTGGTTTCAAAATCGCCGAACTCAAATGAAGACTCAACTGGAGCGCCACGAGAACACGCTACTAAGGCAGGAGAACGACAAGCTCCGAGCAGAGAACATGGCGATTCGCGAGGCGATTAGAAACCCTATCTGCTCGGACTGCGGCGGCCCGGCGATAATCGGAGAAATCTCGCTGGAAGAGCAACAGCTCCGAATCGAAAACGCTCGGCTGAAGGAGGAACTGGAGCGGGTGTGCGGCGTCGCAGGAAAGCTCCTGGCGCGGCCGAGCTCGTGGCCGGCGGCGGAGTATGGGGATCGGAGCGTGTATTTGGAGGTGGCGGTGGCAGCGATGGAAGAGCTGGTGAAGAAAGCGAAGGCGGAGGAGCCGCTGTGGGTGGGAGAGAGGATGAATGAAGAAGAATATGAGAGAATGTTCAGTGGCATTGGAGGTAGAATCAATGGCAATGGCTTCGTTTGTGAAGGTTCCAGAGAAACTGCCATCGTCCTCCTCAACAGTTCTGCTCTGGTTCACACTTTAATGGACGCTAACCGGTGGGCGGAGATGTTTCCGAACATGATCGCCACAGCGACGACCACCGACGTGATCTCCGGCGGCATGGGAGGAACCAAGAACGGCGCTCTCCAACTGATGCATGCGGAGCTCCAAATTCTGTCTCCCATGGTTCCGGTGAGACAGCTCAGCTTCCTCCGCTTCTGCAAGCAGCACGCCGAAGGCGTCTGGGCCATCGTCGACGTCTCCGTCTCCATCGCCGACTCCTCCCCTCCGCCCTGCAGAAGACTCCCCTCCGGCTGCCTCATCCACGACATGCCCAATGGCTACTCTAAGGTTACTTGGGTGGAGCATTCGGAATACGACGAAACCCAAATCCACGAGCTGTACCGGCCCCTCGTCGGCTCCGGCCTCGGCTTCGGCGCCCCCCGCTGGATCGCCACCCTCCAACGCCAGTGCGACTGCCTCGCCACTCTCATCTCCGACCGCGACCATTCCGCGATTACGGCGAGTGGGCGGCGGAGCATGCTGAGGCTGGCGCAGCGTATGACGGCGAACTTCTGCGCCGGCGTGTGCGCGTCGTCGGTGTACAAGTGGAACACGCTGAACGCCGGTGGCAGCGTCGGGGAGGACGTCCGGGTGATGACGAGGAACAGCGTGGACGATCCCGGTGAGCCGCCGGGGACTGTGCTGAGCGCGGCGACGTCGGTTTGGCTGCCGGCGGCGTCGCCGGAGAGAGTGTTCGAGTTCCTCCGGGACGAGCGGCTGAGGAGCGAGTGGGACATTCTGTCCAACGGCGGCCCCATGCAGGAGATGCTCCACATCCCCAAAGCCCAACACCACGCCAACTCCGTCTCTCTCCTCCGCGCCGCCTCTCTGAATCCGAGTCAGAGCAGTATGCTAATTCTCCAAGAGACCTGCACCGATCCCTCGGGATCGCTTGTGGTGTACGCGCCGGTGGACATTCCGGCGATGCAGGTGGTGATGAACGGCGGCGATTCGGCTTACGTGGCGCTGCTGCCGTCCGGATTCGCGATGGTGCCGGACGGCGGCGGCGGAGGGTGTCTACTGACGGTGGCGTTTCAGATATTGGTTAACAGTTTGCCGACGGAGAAACTGACGGTGGAGTCGGTGGAGACGGTGAATAATCTGATATCGTGTACGGTGCAGAAGATTAAAACCGCGCTCCGGTGT 2118 60.67 GGGGGGGYGCLMASGAIAQPRLVTHYSFPKSMFSSPRLSLALTNIDGLGAGEMIPADGYEPNVRRRCREEEPAESRSGSDGGGGGSGDDQDAAGENPRKKKRYHRHTPQQIQELEAMFKECPHPDEKQRLELSRRLCLETKQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMAIREAIRNPICSDCGGPAIIGEISLEEQQLRIENARLKEELERVCGVAGKLLARPSSWPAAEYGDRSVYLEVAVAAMEELVKKAKAEEPLWVGERMNEEEYERMFSGIGGRINGNGFVCEGSRETAIVLLNSSALVHTLMDANRWAEMFPNMIATATTTDVISGGMGGTKNGALQLMHAELQILSPMVPVRQLSFLRFCKQHAEGVWAIVDVSVSIADSSPPPCRRLPSGCLIHDMPNGYSKVTWVEHSEYDETQIHELYRPLVGSGLGFGAPRWIATLQRQCDCLATLISDRDHSAITASGRRSMLRLAQRMTANFCAGVCASSVYKWNTLNAGGSVGEDVRVMTRNSVDDPGEPPGTVLSAATSVWLPAASPERVFEFLRDERLRSEWDILSNGGPMQEMLHIPKAQHHANSVSLLRAASLNPSQSSMLILQETCTDPSGSLVVYAPVDIPAMQVVMNGGDSAYVALLPSGFAMVPDGGGGGCLLTVAFQILVNSLPTEKLTVESVETVNNLISCTVQKIKTALRC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2472769 2477381 + MC05g0324 Mch5g0361 687780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0361 706 SUPERFAMILY Bet v1-like 243 463 - -
Mch5g0361 706 Coils Coil 151 186 - -
Mch5g0361 706 Pfam START domain 249 462 IPR002913 GO:0008289(InterPro)
Mch5g0361 706 ProSitePatterns 'Homeobox' domain signature. 132 155 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Mch5g0361 706 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 78 706 IPR042160 -
Mch5g0361 706 SMART HOX_1 98 161 IPR001356 GO:0003677(InterPro)
Mch5g0361 706 Pfam Homeodomain 100 155 IPR001356 GO:0003677(InterPro)
Mch5g0361 706 SMART START_1 249 463 IPR002913 GO:0008289(InterPro)
Mch5g0361 706 ProSiteProfiles START domain profile. 240 466 IPR002913 GO:0008289(InterPro)
Mch5g0361 706 Coils Coil 198 218 - -
Mch5g0361 706 SUPERFAMILY Bet v1-like 488 701 - -
Mch5g0361 706 Gene3D - 87 173 - -
Mch5g0361 706 ProSiteProfiles 'Homeobox' domain profile. 97 157 IPR001356 GO:0003677(InterPro)
Mch5g0361 706 CDD START_ArGLABRA2_like 244 461 - -
Mch5g0361 706 CDD homeodomain 100 157 IPR001356 GO:0003677(InterPro)
Mch5g0361 706 MobiDBLite consensus disorder prediction 66 108 - -
Mch5g0361 706 SUPERFAMILY Homeodomain-like 84 157 IPR009057 -
Mch5g0361 706 FunFam Homeobox-leucine zipper protein HDG1 86 173 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0361 Mch-Chr5:2472769 Mch6g2205 Mch-Chr6:24307682 5.35E-165 dispersed
Mch10g0172 Mch-Chr10:1029677 Mch5g0361 Mch-Chr5:2472769 7.28E-257 wgd
Mch5g0361 Mch-Chr5:2472769 Mch7g0709 Mch-Chr7:11725418 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43329 PF01852 START 1.80E-45 CL0209 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0361 K09338 - csv:101222248 973.0