Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0393 ATGGCGATCGTGAGTCCTATGCAGGCAACTACACCTCTAGCTGGTCCAACTAATCATGCTGAAGCTTCACCAATTATGTTTAGCTCAAGCAGAGAAATTGTAGAAGAGCCTGCGGGAACTACTGGTGAAGATATAATTTGTGTGGCTGTTGGGAAAGATGTGAAAGAGTGCCAATCGGTTTTGAGGTATGCACTAAAATCGTTACGTAGGAAGAAGATTCGCCTACTACATGTTCATGTCCCTGCACAGATGATTCCACTAATGGGAACAAAATTTCCGGCGAACTCATTGGAGAAGGAGGAAGTGAGAGCATATCGTGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAATGAGTACATTCTTTACTGTCTTCAAGAAGGGGTTCATGTTGATAAATTATGTGCTGAAGCTGAGAGTATTGAAAAGGGAATAGTTGATTTGATTTCTCTGCACAGGATTAAGAAACTTGTTATGGGAGCAGCTGTAGACAAGTACTATTCAAGGAAAATGATGGATCTGAAATCTAAGAAAGCCATTTATGTACGTTCAAAGGCACCGGCTTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATTTGCATCAGGGAGGGTAGTTCAAATGGAGCTCAAGTAGAAGCCACCATCTCATCACCACAAACAAGTCCAGATACTGAAGCCTCAGAAATTAGCCACCGGAGATCTCAGTCACTGCCACTGGGGCAGGTTAGCAGCAGGGAAGTTGGAAGTCCATCTTCGAATTTACGTCCCAGAGGGAGATCATTACTTGTTGACCATTTTAGAGGGAGCATACTAGATCCTTCTCCTTCTCCTTCTCCTTCTCCAAATATTATGAATGGGATTCAAACTGAGAGTAACTTAATTGTTAATGAGGCTTTTGATGAATGGGGTTTATTAACAAGGAGGAGTCCTTATGAACAGTCAGAAAATTCCGTACGCTCTCCTCGTGGTGTGATTGATATGGCTCCATCTCCACTTTCTAGGATTGAGTTAAGTGAAAATGGGCTGGAGCAGGATGGGAAAACAAGTGATTGCCTCTACAATCAATGTGAACGGATGATGATGGAGGCTGCTCATGCAAAGCGTGAAGCATTTTTAGAGGCAATCGCACGAAGAAAATCTGAGAAAGAGACTGTTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGGGTTATACGCTGAAGAATTGAACCATAGGAAGGAGATTGAACAAGAACTAGCAAAGGAAAAGGCAAAACTTGAAAGTATAAAGAAACAACTAAATGAAGAGATGGAAGAACTCCGGATGGCCCAAGATCAGAAGGCAAGTCTTGAGAGAGAACTTTCAGAATCTGACCTAACGGTGAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGACTTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGCTGCAGATTCAACGTGACAATGCACTTAGAGAAGCAGAGGATCTTAGAAAAAATGAATACTCAGGCCGAAACATTCCGCAGTTCTTTACAGAGTTCCCGTTTCGGGAGATTGAGGAAGCAACTAAAAATTTTGATCCTTCAATGAAGATCGGAGAAGGGGGATATGGGAGTATATATAAAGGCTTTTTGCGTCATACTATGGTGGCTATAAAAATCCTTCATCCTGATAGCTCTCAAGGCCCCGCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTGGTCACACTCATTGGAGCCTGCCCAGAAGCCTGGATTCTCATTTATGAATACCTATGTAACGGAAGCCTCGAAGACAGGCTCAGCTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAATTATGCTCGGCTCTTATGTTTCTTCACTCGAGTAAACCCCATAGCATCATACATGGTGACTTGAAACCTGCAAATGTTTTACTCGATGCAAACTATGTTTGCAAGCTTGGCGACTTCGGGATTTGTCGCTTGTTGTCTCGGGATGAAATACTAAACAACAACGAAATGCTTGTTTGGAGAACTGACAACCCTAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGACGTTTATTCGTTCGGGATAATACTGTTGCGGTTATTGACCGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCACTGGGAAATGGAAAGTTAAAGTCCATTTTGGATCCTTTAGCTGGAGACTGGCCTTTCGTCCAGGCTGAACAGCTTGCTCGATTGGCACTGAGGTGTTGTGATATGAACCGAAAGAGCCGCCCCGATCTCATTACTGACATCTGGAGGATGCTTGGACCAATGAGGGCTTCATGTGGTGGCTTATTGTCCGTCCAGCTTGGTTCTGCAGAACCATTTCAACCTCCCCCTTATTTCATCTGTCCCATCTTCCAAGAAGTCATGCAGGACCCACATGTAGCTGCAGATGGTTTTACATACGAAGCAGAAGCCGTGAGAGGATGGCTAGACAGTGGACATGATACTTCCCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAGGAATGGCTTCAACAGAACTGA 2649 43.83 MAIVSPMQATTPLAGPTNHAEASPIMFSSSREIVEEPAGTTGEDIICVAVGKDVKECQSVLRYALKSLRRKKIRLLHVHVPAQMIPLMGTKFPANSLEKEEVRAYREFEKQNLPRVMNEYILYCLQEGVHVDKLCAEAESIEKGIVDLISLHRIKKLVMGAAVDKYYSRKMMDLKSKKAIYVRSKAPAFCHIEFICKGNLICIREGSSNGAQVEATISSPQTSPDTEASEISHRRSQSLPLGQVSSREVGSPSSNLRPRGRSLLVDHFRGSILDPSPSPSPSPNIMNGIQTESNLIVNEAFDEWGLLTRRSPYEQSENSVRSPRGVIDMAPSPLSRIELSENGLEQDGKTSDCLYNQCERMMMEAAHAKREAFLEAIARRKSEKETVNALRRVKAAEGLYAEELNHRKEIEQELAKEKAKLESIKKQLNEEMEELRMAQDQKASLERELSESDLTVKELEQKILSAVDLLQSYKREREELQIQRDNALREAEDLRKNEYSGRNIPQFFTEFPFREIEEATKNFDPSMKIGEGGYGSIYKGFLRHTMVAIKILHPDSSQGPAEFQQEVNVLSKMRHPNLVTLIGACPEAWILIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANYVCKLGDFGICRLLSRDEILNNNEMLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYALGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDIWRMLGPMRASCGGLLSVQLGSAEPFQPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQQN 882
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2688821 2695057 + MC05g_new0039 Mch5g0393 687812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0393 882 ProSiteProfiles Protein kinase domain profile. 523 816 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0393 882 Gene3D Transferase(Phosphotransferase) domain 1 596 797 - -
Mch5g0393 882 ProSiteProfiles U-box domain profile. 811 882 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch5g0393 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 641 653 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0393 882 CDD RING-Ubox_WDSUB1-like 813 868 - -
Mch5g0393 882 FunFam U-box domain-containing protein 54 811 882 - -
Mch5g0393 882 SMART Ubox_2 815 878 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch5g0393 882 MobiDBLite consensus disorder prediction 1 21 - -
Mch5g0393 882 MobiDBLite consensus disorder prediction 213 259 - -
Mch5g0393 882 Gene3D Phosphorylase Kinase; domain 1 502 595 - -
Mch5g0393 882 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 882 IPR013083 -
Mch5g0393 882 PANTHER OS02G0152300 PROTEIN 47 876 IPR051348 -
Mch5g0393 882 Coils Coil 393 497 - -
Mch5g0393 882 Pfam U-box domain 813 882 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch5g0393 882 SUPERFAMILY Protein kinase-like (PK-like) 504 786 IPR011009 -
Mch5g0393 882 SUPERFAMILY RING/U-box 806 882 - -
Mch5g0393 882 SMART serkin_6 523 789 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0393 882 Pfam Protein kinase domain 526 780 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0393 882 CDD STK_N 48 198 - -
Mch5g0393 882 FunFam receptor-like protein kinase FERONIA 487 595 - -
Mch5g0393 882 MobiDBLite consensus disorder prediction 213 258 - -
Mch5g0393 882 ProSitePatterns Protein kinases ATP-binding region signature. 529 550 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0903 Mch-Chr2:6134365 Mch5g0393 Mch-Chr5:2688821 1.05E-148 dispersed
Mch5g0393 Mch-Chr5:2688821 Mch6g2652 Mch-Chr6:28210210 6.21E-110 dispersed
Mch1g1371 Mch-Chr1:15639116 Mch5g0393 Mch-Chr5:2688821 5.03E-70 transposed
Mch6g2247 Mch-Chr6:24667659 Mch5g0393 Mch-Chr5:2688821 1.71E-06 transposed
Mch10g0145 Mch-Chr10:871994 Mch5g0393 Mch-Chr5:2688821 1.45E-156 wgd
Mch5g0393 Mch-Chr5:2688821 Mch7g0670 Mch-Chr7:11369338 3.38E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77392 PF00069 Pkinase 2.70E-42 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0393 - - - 0.0