Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0393 | ATGGCGATCGTGAGTCCTATGCAGGCAACTACACCTCTAGCTGGTCCAACTAATCATGCTGAAGCTTCACCAATTATGTTTAGCTCAAGCAGAGAAATTGTAGAAGAGCCTGCGGGAACTACTGGTGAAGATATAATTTGTGTGGCTGTTGGGAAAGATGTGAAAGAGTGCCAATCGGTTTTGAGGTATGCACTAAAATCGTTACGTAGGAAGAAGATTCGCCTACTACATGTTCATGTCCCTGCACAGATGATTCCACTAATGGGAACAAAATTTCCGGCGAACTCATTGGAGAAGGAGGAAGTGAGAGCATATCGTGAGTTTGAGAAGCAAAATTTGCCGAGGGTCATGAATGAGTACATTCTTTACTGTCTTCAAGAAGGGGTTCATGTTGATAAATTATGTGCTGAAGCTGAGAGTATTGAAAAGGGAATAGTTGATTTGATTTCTCTGCACAGGATTAAGAAACTTGTTATGGGAGCAGCTGTAGACAAGTACTATTCAAGGAAAATGATGGATCTGAAATCTAAGAAAGCCATTTATGTACGTTCAAAGGCACCGGCTTTCTGTCACATTGAGTTTATTTGCAAGGGGAACCTCATTTGCATCAGGGAGGGTAGTTCAAATGGAGCTCAAGTAGAAGCCACCATCTCATCACCACAAACAAGTCCAGATACTGAAGCCTCAGAAATTAGCCACCGGAGATCTCAGTCACTGCCACTGGGGCAGGTTAGCAGCAGGGAAGTTGGAAGTCCATCTTCGAATTTACGTCCCAGAGGGAGATCATTACTTGTTGACCATTTTAGAGGGAGCATACTAGATCCTTCTCCTTCTCCTTCTCCTTCTCCAAATATTATGAATGGGATTCAAACTGAGAGTAACTTAATTGTTAATGAGGCTTTTGATGAATGGGGTTTATTAACAAGGAGGAGTCCTTATGAACAGTCAGAAAATTCCGTACGCTCTCCTCGTGGTGTGATTGATATGGCTCCATCTCCACTTTCTAGGATTGAGTTAAGTGAAAATGGGCTGGAGCAGGATGGGAAAACAAGTGATTGCCTCTACAATCAATGTGAACGGATGATGATGGAGGCTGCTCATGCAAAGCGTGAAGCATTTTTAGAGGCAATCGCACGAAGAAAATCTGAGAAAGAGACTGTTAATGCTCTACGCAGGGTTAAAGCTGCAGAAGGGTTATACGCTGAAGAATTGAACCATAGGAAGGAGATTGAACAAGAACTAGCAAAGGAAAAGGCAAAACTTGAAAGTATAAAGAAACAACTAAATGAAGAGATGGAAGAACTCCGGATGGCCCAAGATCAGAAGGCAAGTCTTGAGAGAGAACTTTCAGAATCTGACCTAACGGTGAAGGAGTTGGAGCAAAAGATTCTTTCTGCTGTTGACTTGTTACAGAGTTACAAAAGAGAGCGAGAGGAGCTGCAGATTCAACGTGACAATGCACTTAGAGAAGCAGAGGATCTTAGAAAAAATGAATACTCAGGCCGAAACATTCCGCAGTTCTTTACAGAGTTCCCGTTTCGGGAGATTGAGGAAGCAACTAAAAATTTTGATCCTTCAATGAAGATCGGAGAAGGGGGATATGGGAGTATATATAAAGGCTTTTTGCGTCATACTATGGTGGCTATAAAAATCCTTCATCCTGATAGCTCTCAAGGCCCCGCTGAATTTCAACAAGAGGTTAATGTATTGAGTAAGATGAGACATCCCAATCTGGTCACACTCATTGGAGCCTGCCCAGAAGCCTGGATTCTCATTTATGAATACCTATGTAACGGAAGCCTCGAAGACAGGCTCAGCTGCAAGGATAATACTCCGCCTTTATCTTGGCAAACACGAATACGCATCGCCACTGAATTATGCTCGGCTCTTATGTTTCTTCACTCGAGTAAACCCCATAGCATCATACATGGTGACTTGAAACCTGCAAATGTTTTACTCGATGCAAACTATGTTTGCAAGCTTGGCGACTTCGGGATTTGTCGCTTGTTGTCTCGGGATGAAATACTAAACAACAACGAAATGCTTGTTTGGAGAACTGACAACCCTAAGGGAACTTTTGCTTACATGGATCCTGAATTCCTTTCATCTGGAGAGCTAACAACAAAGTCAGACGTTTATTCGTTCGGGATAATACTGTTGCGGTTATTGACCGGTAGATCTGCAATGGGGATATCAAAGGAAGTGCAATATGCACTGGGAAATGGAAAGTTAAAGTCCATTTTGGATCCTTTAGCTGGAGACTGGCCTTTCGTCCAGGCTGAACAGCTTGCTCGATTGGCACTGAGGTGTTGTGATATGAACCGAAAGAGCCGCCCCGATCTCATTACTGACATCTGGAGGATGCTTGGACCAATGAGGGCTTCATGTGGTGGCTTATTGTCCGTCCAGCTTGGTTCTGCAGAACCATTTCAACCTCCCCCTTATTTCATCTGTCCCATCTTCCAAGAAGTCATGCAGGACCCACATGTAGCTGCAGATGGTTTTACATACGAAGCAGAAGCCGTGAGAGGATGGCTAGACAGTGGACATGATACTTCCCCAATGACGAATCTTAGGCTCGAGCACCGCAACCTCGTCCCAAACCGTGCTCTTCGTTCTGCTATCCAGGAATGGCTTCAACAGAACTGA | 2649 | 43.83 | MAIVSPMQATTPLAGPTNHAEASPIMFSSSREIVEEPAGTTGEDIICVAVGKDVKECQSVLRYALKSLRRKKIRLLHVHVPAQMIPLMGTKFPANSLEKEEVRAYREFEKQNLPRVMNEYILYCLQEGVHVDKLCAEAESIEKGIVDLISLHRIKKLVMGAAVDKYYSRKMMDLKSKKAIYVRSKAPAFCHIEFICKGNLICIREGSSNGAQVEATISSPQTSPDTEASEISHRRSQSLPLGQVSSREVGSPSSNLRPRGRSLLVDHFRGSILDPSPSPSPSPNIMNGIQTESNLIVNEAFDEWGLLTRRSPYEQSENSVRSPRGVIDMAPSPLSRIELSENGLEQDGKTSDCLYNQCERMMMEAAHAKREAFLEAIARRKSEKETVNALRRVKAAEGLYAEELNHRKEIEQELAKEKAKLESIKKQLNEEMEELRMAQDQKASLERELSESDLTVKELEQKILSAVDLLQSYKREREELQIQRDNALREAEDLRKNEYSGRNIPQFFTEFPFREIEEATKNFDPSMKIGEGGYGSIYKGFLRHTMVAIKILHPDSSQGPAEFQQEVNVLSKMRHPNLVTLIGACPEAWILIYEYLCNGSLEDRLSCKDNTPPLSWQTRIRIATELCSALMFLHSSKPHSIIHGDLKPANVLLDANYVCKLGDFGICRLLSRDEILNNNEMLVWRTDNPKGTFAYMDPEFLSSGELTTKSDVYSFGIILLRLLTGRSAMGISKEVQYALGNGKLKSILDPLAGDWPFVQAEQLARLALRCCDMNRKSRPDLITDIWRMLGPMRASCGGLLSVQLGSAEPFQPPPYFICPIFQEVMQDPHVAADGFTYEAEAVRGWLDSGHDTSPMTNLRLEHRNLVPNRALRSAIQEWLQQN | 882 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2688821 | 2695057 | + | MC05g_new0039 | Mch5g0393 | 687812 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0393 | 882 | ProSiteProfiles | Protein kinase domain profile. | 523 | 816 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0393 | 882 | Gene3D | Transferase(Phosphotransferase) domain 1 | 596 | 797 | - | - | |
Mch5g0393 | 882 | ProSiteProfiles | U-box domain profile. | 811 | 882 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch5g0393 | 882 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 641 | 653 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch5g0393 | 882 | CDD | RING-Ubox_WDSUB1-like | 813 | 868 | - | - | |
Mch5g0393 | 882 | FunFam | U-box domain-containing protein 54 | 811 | 882 | - | - | |
Mch5g0393 | 882 | SMART | Ubox_2 | 815 | 878 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch5g0393 | 882 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Mch5g0393 | 882 | MobiDBLite | consensus disorder prediction | 213 | 259 | - | - | |
Mch5g0393 | 882 | Gene3D | Phosphorylase Kinase; domain 1 | 502 | 595 | - | - | |
Mch5g0393 | 882 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 811 | 882 | IPR013083 | - | |
Mch5g0393 | 882 | PANTHER | OS02G0152300 PROTEIN | 47 | 876 | IPR051348 | - | |
Mch5g0393 | 882 | Coils | Coil | 393 | 497 | - | - | |
Mch5g0393 | 882 | Pfam | U-box domain | 813 | 882 | IPR003613 | GO:0004842(InterPro)|GO:0016567(InterPro) | |
Mch5g0393 | 882 | SUPERFAMILY | Protein kinase-like (PK-like) | 504 | 786 | IPR011009 | - | |
Mch5g0393 | 882 | SUPERFAMILY | RING/U-box | 806 | 882 | - | - | |
Mch5g0393 | 882 | SMART | serkin_6 | 523 | 789 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0393 | 882 | Pfam | Protein kinase domain | 526 | 780 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0393 | 882 | CDD | STK_N | 48 | 198 | - | - | |
Mch5g0393 | 882 | FunFam | receptor-like protein kinase FERONIA | 487 | 595 | - | - | |
Mch5g0393 | 882 | MobiDBLite | consensus disorder prediction | 213 | 258 | - | - | |
Mch5g0393 | 882 | ProSitePatterns | Protein kinases ATP-binding region signature. | 529 | 550 | IPR017441 | GO:0005524(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch2g0903 | Mch-Chr2:6134365 | Mch5g0393 | Mch-Chr5:2688821 | 1.05E-148 | dispersed | |
Mch5g0393 | Mch-Chr5:2688821 | Mch6g2652 | Mch-Chr6:28210210 | 6.21E-110 | dispersed | |
Mch1g1371 | Mch-Chr1:15639116 | Mch5g0393 | Mch-Chr5:2688821 | 5.03E-70 | transposed | |
Mch6g2247 | Mch-Chr6:24667659 | Mch5g0393 | Mch-Chr5:2688821 | 1.71E-06 | transposed | |
Mch10g0145 | Mch-Chr10:871994 | Mch5g0393 | Mch-Chr5:2688821 | 1.45E-156 | wgd | |
Mch5g0393 | Mch-Chr5:2688821 | Mch7g0670 | Mch-Chr7:11369338 | 3.38E-141 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77392 | PF00069 | Pkinase | 2.70E-42 | CL0016 | Mch | PK |
Pathway information
