Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0406 ATGGCTGGCATCAGGATTTTCATTCTGAAGTCGATTTATACTTCCTCACGCTCTTATTTGAACCCGTACTCATCTCAATCTTACAAGCCTTACACCAAAATTTCCGAGTACGTTGACCGGGGTCTTAGACCGAGTACTGTTCTAAATAAAAAATGCCACAATGATAACTCTCGCCGCACGAAAAACACTTCGGGTACTGGTTTCCCAAGGGCAGCTTCTGTATGTGGTTTAAATATCTCCAGTCACGGTGCATATCCCATTGATACATTTTTGCCTGCATGGTCGGTGAGATACTGGAGAACTGTCCCTCTTACTTCACCCGGCCATCTGTCAAATCCTCGATTGTATTCATCGGCTTCTAGCAGGAAAGCTGATATAACTGGAGACACTGGTGTTTCAGCAGCTTCTGCTGGTGTTGAAGCAGATATCAGTAACACCCAAGATGTTGGAACTGGAAAGGAATGGCTTGAAAGAGTTAAGGATGTCTGGCAGAGTGCTGTAGATGCAGCATCTTTCACCGAGCAGAAGGCTAAAGAAGTGTCTGATGAATTCACTCCTCACGTAGATAAACTCTTTGATTCACATCCATACCTTAAAAATGTAATTGTTCCTTATTCAATGCGAGGTCCCGTTGCCTTACTATCTGGAAGCATATCTGTTGAGGAAATTCCTTATGAGAAAAGCTTTTGGGGTGCCTTGGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCATGATGGTTGCACCTACCACTGTTGCATCAGAATATGTTACACAGGCGTGTAGGGGGGCTGTCATTCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGCTGTCTCGAGCATTGGCCTCCCAGAGTTTTTCAGGGCTTGATCGGGAAAAGTTGCTTACCCTAGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAGTCTATGTTGACCGTTGGTGGCATTGGAGGAGTGGCCGCTGCTTTTGCTGCGAGGGACATACTTGGGAATGTTTTAAGCGGCTTAACGATGCAGTTTTCACAACCCTTCTCTCTCGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTAATGACAACATCATTACTAAGCGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTATTTTCTAGCCAGGTAATTGTAAATAAATCGAGGGCGCAGTGGCGTGCCATCACCAAGAAAATTCCTTTGCAAGTTGATAATCTCAGTACTGTTTCTCAGATATCAGATAACATTAAGAGTATGCTTAGATCTCACCCAAAAGTGTTCTTGGGAAAGGAGGCTCCTTATTGCTTTCTCTCTCAAATTGAGAGTACATATGCAGAATTGACAATTGGTTGCAACCTTAGAAAGATGAGTAAAGATGAGTTATTCTCCACGGAGCAAGATATCCTCCTTCAGTCAGTACAGATCATTAAAGAACATGGTGCAACCTTGGGTAGCACCATGTCTGATTGGACGAACCAATGA 1569 43.4 MAGIRIFILKSIYTSSRSYLNPYSSQSYKPYTKISEYVDRGLRPSTVLNKKCHNDNSRRTKNTSGTGFPRAASVCGLNISSHGAYPIDTFLPAWSVRYWRTVPLTSPGHLSNPRLYSSASSRKADITGDTGVSAASAGVEADISNTQDVGTGKEWLERVKDVWQSAVDAASFTEQKAKEVSDEFTPHVDKLFDSHPYLKNVIVPYSMRGPVALLSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTTVASEYVTQACRGAVILSLVWFIYRWKTNVLSRALASQSFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVAAAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIVNKSRAQWRAITKKIPLQVDNLSTVSQISDNIKSMLRSHPKVFLGKEAPYCFLSQIESTYAELTIGCNLRKMSKDELFSTEQDILLQSVQIIKEHGATLGSTMSDWTNQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2781080 2785970 + MC05g0365 Mch5g0406 687825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0406 522 SUPERFAMILY Sm-like ribonucleoproteins 351 416 IPR010920 -
Mch5g0406 522 Gene3D - 367 415 IPR023408 -
Mch5g0406 522 Pfam Mechanosensitive ion channel, beta-domain 351 418 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0406 522 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 266 350 IPR011014 GO:0016020(InterPro)
Mch5g0406 522 Gene3D - 262 365 - -
Mch5g0406 522 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 197 519 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0406 K22047 - csv:101220483 758.444