Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0406 ATGGCTGGCATCAGGATTTTCATTCTGAAGTCGATTTATACTTCCTCACGCTCTTATTTGAACCCGTACTCATCTCAATCTTACAAGCCTTACACCAAAATTTCCGAGTACGTTGACCGGGGTCTTAGACCGAGTACTGTTCTAAATAAAAAATGCCACAATGATAACTCTCGCCGCACGAAAAACACTTCGGGTACTGGTTTCCCAAGGGCAGCTTCTGTATGTGGTTTAAATATCTCCAGTCACGGTGCATATCCCATTGATACATTTTTGCCTGCATGGTCGGTGAGATACTGGAGAACTGTCCCTCTTACTTCACCCGGCCATCTGTCAAATCCTCGATTGTATTCATCGGCTTCTAGCAGGAAAGCTGATATAACTGGAGACACTGGTGTTTCAGCAGCTTCTGCTGGTGTTGAAGCAGATATCAGTAACACCCAAGATGTTGGAACTGGAAAGGAATGGCTTGAAAGAGTTAAGGATGTCTGGCAGAGTGCTGTAGATGCAGCATCTTTCACCGAGCAGAAGGCTAAAGAAGTGTCTGATGAATTCACTCCTCACGTAGATAAACTCTTTGATTCACATCCATACCTTAAAAATGTAATTGTTCCTTATTCAATGCGAGGTCCCGTTGCCTTACTATCTGGAAGCATATCTGTTGAGGAAATTCCTTATGAGAAAAGCTTTTGGGGTGCCTTGGAGGATCCTTTGCGATATCTTGTTACCTTCTTTGCATTTTCTCAAATTGGCATGATGGTTGCACCTACCACTGTTGCATCAGAATATGTTACACAGGCGTGTAGGGGGGCTGTCATTCTTTCCCTTGTCTGGTTTATTTATCGCTGGAAAACAAATGTGCTGTCTCGAGCATTGGCCTCCCAGAGTTTTTCAGGGCTTGATCGGGAAAAGTTGCTTACCCTAGACAAAGTTTCATCTGTTGGCCTATTTGCAATCGGATTAATGGCTTTGGCCGAGGCATCTGGGGTGGCTGTTCAGTCTATGTTGACCGTTGGTGGCATTGGAGGAGTGGCCGCTGCTTTTGCTGCGAGGGACATACTTGGGAATGTTTTAAGCGGCTTAACGATGCAGTTTTCACAACCCTTCTCTCTCGGAGATACAATTAAGGCTGGTGCTATTGAAGGTCAAGTTGTGGAAATGGGACTAATGACAACATCATTACTAAGCGCTGAAAAATTTCCAATCGTTGTTCCAAATTCTCTATTTTCTAGCCAGGTAATTGTAAATAAATCGAGGGCGCAGTGGCGTGCCATCACCAAGAAAATTCCTTTGCAAGTTGATAATCTCAGTACTGTTTCTCAGATATCAGATAACATTAAGAGTATGCTTAGATCTCACCCAAAAGTGTTCTTGGGAAAGGAGGCTCCTTATTGCTTTCTCTCTCAAATTGAGAGTACATATGCAGAATTGACAATTGGTTGCAACCTTAGAAAGATGAGTAAAGATGAGTTATTCTCCACGGAGCAAGATATCCTCCTTCAGTCAGTACAGATCATTAAAGAACATGGTGCAACCTTGGGTAGCACCATGTCTGATTGGACGAACCAATGA 1569 43.4 MAGIRIFILKSIYTSSRSYLNPYSSQSYKPYTKISEYVDRGLRPSTVLNKKCHNDNSRRTKNTSGTGFPRAASVCGLNISSHGAYPIDTFLPAWSVRYWRTVPLTSPGHLSNPRLYSSASSRKADITGDTGVSAASAGVEADISNTQDVGTGKEWLERVKDVWQSAVDAASFTEQKAKEVSDEFTPHVDKLFDSHPYLKNVIVPYSMRGPVALLSGSISVEEIPYEKSFWGALEDPLRYLVTFFAFSQIGMMVAPTTVASEYVTQACRGAVILSLVWFIYRWKTNVLSRALASQSFSGLDREKLLTLDKVSSVGLFAIGLMALAEASGVAVQSMLTVGGIGGVAAAFAARDILGNVLSGLTMQFSQPFSLGDTIKAGAIEGQVVEMGLMTTSLLSAEKFPIVVPNSLFSSQVIVNKSRAQWRAITKKIPLQVDNLSTVSQISDNIKSMLRSHPKVFLGKEAPYCFLSQIESTYAELTIGCNLRKMSKDELFSTEQDILLQSVQIIKEHGATLGSTMSDWTNQ 522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2781080 2785970 + MC05g0365 Mch5g0406 687825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0406 522 SUPERFAMILY Sm-like ribonucleoproteins 351 416 IPR010920 -
Mch5g0406 522 Gene3D - 367 415 IPR023408 -
Mch5g0406 522 Pfam Mechanosensitive ion channel, beta-domain 351 418 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0406 522 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 266 350 IPR011014 GO:0016020(InterPro)
Mch5g0406 522 Gene3D - 262 365 - -
Mch5g0406 522 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 197 519 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0406 K22047 - - csv:101220483 758.444
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008844 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 1 33