Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0414 ATGTCGGTTTATGATGCTGCATTTGTGAACACGGAGCTCTCTAAGCCGACCTCCATCTTCGGCCTCCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCTCTGATAGTTCTCGCGCTGTTTCTGCTGTCCCTCTGCCTCACTTCTCGCAAGAGGAACCGCCACAAGAACCAAATCCGTTTCCCCAAGTCCACTACCGACCACTCCCCTCCCGCCGTTTCCAAAGAGATCCAGGAAATCGTCCATCACGCCGTGCCGGATCACCACCACCACCTCCAGCCGGAAATTCACGTCGAGATCGGAAAATCGGAGCATCGGGTTGTTTTCTCCGACAGACCTTCCAGTGGGGAGAGCAGAGGTGCTGTGAGTGAAACTGCTTCTTCTTTTGGATCTGGTACCGTCGGGCCGGAGGTTTCACACCTGGGTTGGGGTAGATGGTATACTCTGAGAGAGCTCGAGGCAGCCACTAATGGCTTGTGTGAGGAGAATGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTGGGCGTTTTAGCAGACGGTACCAGAATTGCTATCAAGAACCTCTTAAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGCGTAAGGCACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATCTAGACCAATGGCTTCATGGCGATGTTGGTGACGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCGAAGGTTGTTCATCGTGATGTAAAATCTAGCAACATACTGCTAGATCGTCAGTGGAATGCTAAAGTATCGGATTTTGGACTGGCCAAGCTTCTTTGTTCTGAAAGGAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCTCCCGAGTACGCTTGCACTGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGTTAATTTCCGGGCGAAGCCCTGTTGATTATGGTAGACCCCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAATCCATGGTTGGAGACCGAAAATCCGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCACTGAAACGTGTTTTGCTGGTTGCTCTTCGGTGTGTTGATCCCGATGCAACGAAGAGGCCGAAAATGGGGCATGTCATCCACATGCTTGAGGCAGATAATTTACTGTCTCATCATGAACATCGGGTCGGTAGGGATTCTTCCCACTCAATTCAAGGTGATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAAGGAACATCTTCTAATATAAGTGAAGGTGAGAGTGATGGAAATACTCAACATCCAAGTAGGTGGAGATAA 1482 48.18 MSVYDAAFVNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTDHSPPAVSKEIQEIVHHAVPDHHHHLQPEIHVEIGKSEHRVVFSDRPSSGESRGAVSETASSFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGVLADGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMELISGRSPVDYGRPQGEVNLVDWLKSMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHHEHRVGRDSSHSIQGDQHENRAVPRRVNNQKDEGTSSNISEGESDGNTQHPSRWR 493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2808800 2812651 - MC05g0373 Mch5g0414 687833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0414 493 MobiDBLite consensus disorder prediction 440 493 - -
Mch5g0414 493 ProSitePatterns Protein kinases ATP-binding region signature. 165 187 IPR017441 GO:0005524(InterPro)
Mch5g0414 493 PANTHER OS01G0323000 PROTEIN 8 470 IPR052232 -
Mch5g0414 493 CDD STKc_IRAK 165 431 - -
Mch5g0414 493 MobiDBLite consensus disorder prediction 116 130 - -
Mch5g0414 493 MobiDBLite consensus disorder prediction 440 466 - -
Mch5g0414 493 Pfam Protein tyrosine and serine/threonine kinase 162 429 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0414 493 ProSiteProfiles Protein kinase domain profile. 159 436 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0414 493 SUPERFAMILY Protein kinase-like (PK-like) 138 431 IPR011009 -
Mch5g0414 493 Gene3D Transferase(Phosphotransferase) domain 1 235 447 - -
Mch5g0414 493 FunFam Putative receptor-like serine/threonine-protein kinase 235 445 - -
Mch5g0414 493 MobiDBLite consensus disorder prediction 467 493 - -
Mch5g0414 493 MobiDBLite consensus disorder prediction 111 130 - -
Mch5g0414 493 FunFam Probable serine/threonine-protein kinase At1g01540 139 234 - -
Mch5g0414 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0414 493 SMART serkin_6 159 430 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0414 493 Gene3D Phosphorylase Kinase; domain 1 140 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0414 Mch-Chr5:2808800 Mch7g1272 Mch-Chr7:16185821 1.28E-146 dispersed
Mch9g1382 Mch-Chr9:16207679 Mch5g0414 Mch-Chr5:2808800 4.06E-53 dispersed
Mch8g0674 Mch-Chr8:4797631 Mch5g0414 Mch-Chr5:2808800 1.81E-210 transposed
Mch10g0829 Mch-Chr10:5777941 Mch5g0414 Mch-Chr5:2808800 1.61E-30 wgd
Mch10g0127 Mch-Chr10:747553 Mch5g0414 Mch-Chr5:2808800 1.84E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77394 PF07714 PK_Tyr_Ser-Thr 1.60E-45 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0414 - - - 0.0