Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0414 | ATGTCGGTTTATGATGCTGCATTTGTGAACACGGAGCTCTCTAAGCCGACCTCCATCTTCGGCCTCCGTCTCTGGGTTGTAATCGGAATCTTAGTCGGAGCTCTGATAGTTCTCGCGCTGTTTCTGCTGTCCCTCTGCCTCACTTCTCGCAAGAGGAACCGCCACAAGAACCAAATCCGTTTCCCCAAGTCCACTACCGACCACTCCCCTCCCGCCGTTTCCAAAGAGATCCAGGAAATCGTCCATCACGCCGTGCCGGATCACCACCACCACCTCCAGCCGGAAATTCACGTCGAGATCGGAAAATCGGAGCATCGGGTTGTTTTCTCCGACAGACCTTCCAGTGGGGAGAGCAGAGGTGCTGTGAGTGAAACTGCTTCTTCTTTTGGATCTGGTACCGTCGGGCCGGAGGTTTCACACCTGGGTTGGGGTAGATGGTATACTCTGAGAGAGCTCGAGGCAGCCACTAATGGCTTGTGTGAGGAGAATGTGATTGGAGAAGGTGGGTATGGGATCGTGTATTTGGGCGTTTTAGCAGACGGTACCAGAATTGCTATCAAGAACCTCTTAAATAACAGGGGTCAAGCTGAGAGGGAATTCAAAGTGGAAGTTGAAGCAATTGGACGCGTAAGGCACAAGAATCTTGTCAGGTTGCTGGGATATTGCGTTGAGGGTGCATATAGAATGCTTGTTTATGAGTACGTTAACAATGGCAATCTAGACCAATGGCTTCATGGCGATGTTGGTGACGTGAGCCCCTTGACGTGGGAGATTCGTGTTAACATCATACTCGGAACAGCAAAGGGATTAGCCTATCTTCATGAGGGTCTTGAACCGAAGGTTGTTCATCGTGATGTAAAATCTAGCAACATACTGCTAGATCGTCAGTGGAATGCTAAAGTATCGGATTTTGGACTGGCCAAGCTTCTTTGTTCTGAAAGGAGCTATGTGACAACTCGTGTAATGGGCACATTTGGCTATGTTGCTCCCGAGTACGCTTGCACTGGAATGTTGAATGAGAAGAGTGATGTTTATAGCTTTGGAATTCTAATTATGGAGTTAATTTCCGGGCGAAGCCCTGTTGATTATGGTAGACCCCAAGGAGAGGTAAATTTGGTGGATTGGTTGAAATCCATGGTTGGAGACCGAAAATCCGAGGAAGTGGTTGACCCCAAGTTGCCCGAGAAGCCTCCTTCCAAAGCACTGAAACGTGTTTTGCTGGTTGCTCTTCGGTGTGTTGATCCCGATGCAACGAAGAGGCCGAAAATGGGGCATGTCATCCACATGCTTGAGGCAGATAATTTACTGTCTCATCATGAACATCGGGTCGGTAGGGATTCTTCCCACTCAATTCAAGGTGATCAACATGAGAACCGGGCCGTTCCAAGACGAGTTAACAATCAGAAAGATGAAGGAACATCTTCTAATATAAGTGAAGGTGAGAGTGATGGAAATACTCAACATCCAAGTAGGTGGAGATAA | 1482 | 48.18 | MSVYDAAFVNTELSKPTSIFGLRLWVVIGILVGALIVLALFLLSLCLTSRKRNRHKNQIRFPKSTTDHSPPAVSKEIQEIVHHAVPDHHHHLQPEIHVEIGKSEHRVVFSDRPSSGESRGAVSETASSFGSGTVGPEVSHLGWGRWYTLRELEAATNGLCEENVIGEGGYGIVYLGVLADGTRIAIKNLLNNRGQAEREFKVEVEAIGRVRHKNLVRLLGYCVEGAYRMLVYEYVNNGNLDQWLHGDVGDVSPLTWEIRVNIILGTAKGLAYLHEGLEPKVVHRDVKSSNILLDRQWNAKVSDFGLAKLLCSERSYVTTRVMGTFGYVAPEYACTGMLNEKSDVYSFGILIMELISGRSPVDYGRPQGEVNLVDWLKSMVGDRKSEEVVDPKLPEKPPSKALKRVLLVALRCVDPDATKRPKMGHVIHMLEADNLLSHHEHRVGRDSSHSIQGDQHENRAVPRRVNNQKDEGTSSNISEGESDGNTQHPSRWR | 493 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2808800 | 2812651 | - | MC05g0373 | Mch5g0414 | 687833 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0414 | 493 | MobiDBLite | consensus disorder prediction | 440 | 493 | - | - | |
Mch5g0414 | 493 | ProSitePatterns | Protein kinases ATP-binding region signature. | 165 | 187 | IPR017441 | GO:0005524(InterPro) | |
Mch5g0414 | 493 | PANTHER | OS01G0323000 PROTEIN | 8 | 470 | IPR052232 | - | |
Mch5g0414 | 493 | CDD | STKc_IRAK | 165 | 431 | - | - | |
Mch5g0414 | 493 | MobiDBLite | consensus disorder prediction | 116 | 130 | - | - | |
Mch5g0414 | 493 | MobiDBLite | consensus disorder prediction | 440 | 466 | - | - | |
Mch5g0414 | 493 | Pfam | Protein tyrosine and serine/threonine kinase | 162 | 429 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch5g0414 | 493 | ProSiteProfiles | Protein kinase domain profile. | 159 | 436 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0414 | 493 | SUPERFAMILY | Protein kinase-like (PK-like) | 138 | 431 | IPR011009 | - | |
Mch5g0414 | 493 | Gene3D | Transferase(Phosphotransferase) domain 1 | 235 | 447 | - | - | |
Mch5g0414 | 493 | FunFam | Putative receptor-like serine/threonine-protein kinase | 235 | 445 | - | - | |
Mch5g0414 | 493 | MobiDBLite | consensus disorder prediction | 467 | 493 | - | - | |
Mch5g0414 | 493 | MobiDBLite | consensus disorder prediction | 111 | 130 | - | - | |
Mch5g0414 | 493 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 139 | 234 | - | - | |
Mch5g0414 | 493 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 281 | 293 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch5g0414 | 493 | SMART | serkin_6 | 159 | 430 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0414 | 493 | Gene3D | Phosphorylase Kinase; domain 1 | 140 | 234 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0414 | Mch-Chr5:2808800 | Mch7g1272 | Mch-Chr7:16185821 | 1.28E-146 | dispersed | |
Mch9g1382 | Mch-Chr9:16207679 | Mch5g0414 | Mch-Chr5:2808800 | 4.06E-53 | dispersed | |
Mch8g0674 | Mch-Chr8:4797631 | Mch5g0414 | Mch-Chr5:2808800 | 1.81E-210 | transposed | |
Mch10g0829 | Mch-Chr10:5777941 | Mch5g0414 | Mch-Chr5:2808800 | 1.61E-30 | wgd | |
Mch10g0127 | Mch-Chr10:747553 | Mch5g0414 | Mch-Chr5:2808800 | 1.84E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77394 | PF07714 | PK_Tyr_Ser-Thr | 1.60E-45 | CL0016 | Mch | PK |
Pathway information
