Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0423 ATGGAAGACGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCTCCGCCACGCCCTCCGCCGTCTCTGACTTTTACTCTGTTTCTTCCAATTCCAATTCCATCCCTTTTACTTTTGGTAGAGACCAAACCAACGACCACTTTTTCTCCCTTCAAGATCCATTTGAGGGACCCAATTCCAGCGAGGAATTGCATGAGCTTTTCAAGCCCTTCTTCCCCAAATCTCAGCCCCCTCCGCCGCCGCTCCTCCCTTCTCCGGCCGCCGCTCTCTCCTCTCTTTCCGGCCCCAAACAGAAACAACTCCACACCCATCTCCCTAAACACCTCCATTCATCCTCCGTCGCCGCCCCAAGATCTAAAAGACGGAAGAATCAGCTGAAGAAAGTTTGTCAAGTTCCGGCGGAGTCTCTGTCGTCGGACATATGGGCTTGGCGGAAATATGGGCAGAAACCCATCAAGGGATCTCCATATCCCAGGGGATACTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATCGTCACCTACACGGCGGAGCACAACCACCCGGCGCCGACGCACCGGAACTCGCTCGCCGGATCCACGCGGCAGAAGCCCGCCACAATGCCTCCGCCGGCCGGATCCGGGGACCAGGCCAAGCCCGACCCGAAACAGCCGGCTTGCTCTTCTTCCTCGTCGCCGGACGACGAGGCGGTGGCCCAAAGCACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTGGCCGACGACGAAGAAGACGACGACCTCGGAGTCTCCGATATGATTGTGAGCGACGATTTCTTTGTGGGTTTTGAAGAACTCGACAGTCCAAGCGCCAACGGCTACTTTTCCGACCACTTTCCGGCCAATTTTGGACTCCCCTGGTTGTTCAACAATGCCGCCACCGCCGCTAGCGGAATTTAG 966 56.21 MEDDWDLHAVVRGCSATPSAVSDFYSVSSNSNSIPFTFGRDQTNDHFFSLQDPFEGPNSSEELHELFKPFFPKSQPPPPPLLPSPAAALSSLSGPKQKQLHTHLPKHLHSSSVAAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPATMPPPAGSGDQAKPDPKQPACSSSSSPDDEAVAQSTITESKEEKEELLADDEEDDDLGVSDMIVSDDFFVGFEELDSPSANGYFSDHFPANFGLPWLFNNAATAASGI 321
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 2897503 2902592 + MC05g0382 Mch5g0423 687842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0423 321 MobiDBLite consensus disorder prediction 192 271 - -
Mch5g0423 321 Gene3D WRKY domain 121 191 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0423 321 MobiDBLite consensus disorder prediction 74 130 - -
Mch5g0423 321 ProSiteProfiles WRKY domain profile. 132 198 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0423 321 SUPERFAMILY WRKY DNA-binding domain 135 198 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0423 321 SMART WRKY_cls 137 197 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0423 321 MobiDBLite consensus disorder prediction 195 210 - -
Mch5g0423 321 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 5 261 IPR044810 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)
Mch5g0423 321 FunFam WRKY transcription factor 22 121 191 - -
Mch5g0423 321 MobiDBLite consensus disorder prediction 230 247 - -
Mch5g0423 321 Pfam WRKY DNA -binding domain 139 196 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g2119 Mch-Chr1:20435556 Mch5g0423 Mch-Chr5:2897503 1.27E-42 dispersed
Mch3g0875 Mch-Chr3:12722382 Mch5g0423 Mch-Chr5:2897503 1.18E-40 dispersed
Mch3g1057 Mch-Chr3:14149178 Mch5g0423 Mch-Chr5:2897503 1.87E-31 dispersed
Mch5g0423 Mch-Chr5:2897503 Mch6g0480 Mch-Chr6:3169097 2.49E-30 dispersed
Mch10g0839 Mch-Chr10:5863959 Mch5g0423 Mch-Chr5:2897503 5.78E-47 wgd
Mch5g0423 Mch-Chr5:2897503 Mch6g2425 Mch-Chr6:26145924 2.39E-55 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43336 PF03106 WRKY 4.20E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0423 K13425 - csv:101217082 374.4