Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0423 | ATGGAAGACGATTGGGATCTCCACGCCGTCGTCAGAGGCTGCTCCGCCACGCCCTCCGCCGTCTCTGACTTTTACTCTGTTTCTTCCAATTCCAATTCCATCCCTTTTACTTTTGGTAGAGACCAAACCAACGACCACTTTTTCTCCCTTCAAGATCCATTTGAGGGACCCAATTCCAGCGAGGAATTGCATGAGCTTTTCAAGCCCTTCTTCCCCAAATCTCAGCCCCCTCCGCCGCCGCTCCTCCCTTCTCCGGCCGCCGCTCTCTCCTCTCTTTCCGGCCCCAAACAGAAACAACTCCACACCCATCTCCCTAAACACCTCCATTCATCCTCCGTCGCCGCCCCAAGATCTAAAAGACGGAAGAATCAGCTGAAGAAAGTTTGTCAAGTTCCGGCGGAGTCTCTGTCGTCGGACATATGGGCTTGGCGGAAATATGGGCAGAAACCCATCAAGGGATCTCCATATCCCAGGGGATACTACAGATGTAGCAGTTCAAAGGGTTGCATGGCCCGGAAACAAGTGGAGAGGAACAGATCCGACCCGGGAATGTTCATCGTCACCTACACGGCGGAGCACAACCACCCGGCGCCGACGCACCGGAACTCGCTCGCCGGATCCACGCGGCAGAAGCCCGCCACAATGCCTCCGCCGGCCGGATCCGGGGACCAGGCCAAGCCCGACCCGAAACAGCCGGCTTGCTCTTCTTCCTCGTCGCCGGACGACGAGGCGGTGGCCCAAAGCACGATCACGGAGAGCAAAGAAGAGAAAGAGGAATTATTGGCCGACGACGAAGAAGACGACGACCTCGGAGTCTCCGATATGATTGTGAGCGACGATTTCTTTGTGGGTTTTGAAGAACTCGACAGTCCAAGCGCCAACGGCTACTTTTCCGACCACTTTCCGGCCAATTTTGGACTCCCCTGGTTGTTCAACAATGCCGCCACCGCCGCTAGCGGAATTTAG | 966 | 56.21 | MEDDWDLHAVVRGCSATPSAVSDFYSVSSNSNSIPFTFGRDQTNDHFFSLQDPFEGPNSSEELHELFKPFFPKSQPPPPPLLPSPAAALSSLSGPKQKQLHTHLPKHLHSSSVAAPRSKRRKNQLKKVCQVPAESLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCMARKQVERNRSDPGMFIVTYTAEHNHPAPTHRNSLAGSTRQKPATMPPPAGSGDQAKPDPKQPACSSSSSPDDEAVAQSTITESKEEKEELLADDEEDDDLGVSDMIVSDDFFVGFEELDSPSANGYFSDHFPANFGLPWLFNNAATAASGI | 321 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 2897503 | 2902592 | + | MC05g0382 | Mch5g0423 | 687842 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0423 | 321 | MobiDBLite | consensus disorder prediction | 192 | 271 | - | - | |
Mch5g0423 | 321 | Gene3D | WRKY domain | 121 | 191 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0423 | 321 | MobiDBLite | consensus disorder prediction | 74 | 130 | - | - | |
Mch5g0423 | 321 | ProSiteProfiles | WRKY domain profile. | 132 | 198 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0423 | 321 | SUPERFAMILY | WRKY DNA-binding domain | 135 | 198 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0423 | 321 | SMART | WRKY_cls | 137 | 197 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0423 | 321 | MobiDBLite | consensus disorder prediction | 195 | 210 | - | - | |
Mch5g0423 | 321 | PANTHER | WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED | 5 | 261 | IPR044810 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER) | |
Mch5g0423 | 321 | FunFam | WRKY transcription factor 22 | 121 | 191 | - | - | |
Mch5g0423 | 321 | MobiDBLite | consensus disorder prediction | 230 | 247 | - | - | |
Mch5g0423 | 321 | Pfam | WRKY DNA -binding domain | 139 | 196 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch1g2119 | Mch-Chr1:20435556 | Mch5g0423 | Mch-Chr5:2897503 | 1.27E-42 | dispersed | |
Mch3g0875 | Mch-Chr3:12722382 | Mch5g0423 | Mch-Chr5:2897503 | 1.18E-40 | dispersed | |
Mch3g1057 | Mch-Chr3:14149178 | Mch5g0423 | Mch-Chr5:2897503 | 1.87E-31 | dispersed | |
Mch5g0423 | Mch-Chr5:2897503 | Mch6g0480 | Mch-Chr6:3169097 | 2.49E-30 | dispersed | |
Mch10g0839 | Mch-Chr10:5863959 | Mch5g0423 | Mch-Chr5:2897503 | 5.78E-47 | wgd | |
Mch5g0423 | Mch-Chr5:2897503 | Mch6g2425 | Mch-Chr6:26145924 | 2.39E-55 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43336 | PF03106 | WRKY | 4.20E-25 | CL0274 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0423 | K13425 | - | csv:101217082 | 374.4 |