Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0470 ATGTCCAAATTTATGGGTTCCCTGAAACCAAAATCTCTCAGGTTTGGATATCCAACTTCTGATATCCATGTAAGATATGGAGGTTACCAAAACAGGAGCAGGCTGTCTCCAGCGTCAATATTGGAGAGCATACAGAGAAAAATTTCTAGTGCTTCTGAAGGCTTTAGAAGGATGGTAGCAAATTTAGGCTTCAAGCATGAAGATGATCAGTCAAGGAAAAAACCAGAATTTTGGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTGTGTCCTAGCAGTAGCTGTGGACCCTCTCTTTTTTTACATCCCAGTGATGGATAGGCAACACCAATGCCTAACCATGGACCGGCTCCTTATGATCATTGCTTGCGTTCTTCGTTCATTCATCGACATATTCTATCTACTTCACATTATCTTTGAATTCCGAACGGGCTTTTTACCTCCTTCTTTGCCAGTATTTGGAAGTGGCGAACTAGTTGAAGATCCAGCAGCTATAGCAAAAAGATACCTGTCCTCAAACTTCATAATCGATATCTTATCCATTATCCCTCTGCCTCAGCTTTTGGCATTAGTTATCATACCGGCAGCGAAAGGCCCGATTCCATTGAAGACAAAGAACTTCATGAAGGTTGCGGTTCTTTTGCAGTACCTTCCAAGGCTTTTCCGAATCTATCCGCTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAACAGCCTGGAGTGGAGCTGCCTTCAATCTCCTTATTTATATGCTAGCTAGTCATGTATTTGGTGCCATTTGGTATTTATTTTCAGTAGAACAAGAATCAAGATGCTGGCATGAGGCGTGCAGGAAAAATAACTGTAATAGCAAGTATCTGTACTGTGGAGATCACAGCAGACCGGCATACGGGTTTATAAAGGAGTATTGCCCTCATAAAGAGTCTGAAGATGACAAGACCTTCAACTTTGGGATATATCTTGAAGCCCTTAAGTTCCGTTTAACCGATCAGACGACAAATTTTCACAGCAAATTCTTTTATTGCTTCTGGTGGGCTCTGCGAAATGTCGGCTCAAGTGGACAGAACCTTCAAATAAGCAATTACTTGGGAGAGCTTTTTTTTGCTGTCTTCATTGCCATCCTTGGTTTGGTTTTGTTTGCGTTACTCATTAGCAATATTCAGAAATATCTGCAATCAACAACTGTTAAAGTAGAGCAGATGAGAATTAACAGAAGAGACGCCGAGCATTGGATGGTGCATCGTATGCTCCCGGAGGACTTGAGGCAGCGTATTAGACGATACGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAATGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAAACGCCATCTCTGCTTGGCTCTGCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAGCAACTGTTGGATGCCATGTGCGAATATCTCAAGCCAGTGCTGTTCACAGAGAAGAGCGACATTCTGCAAGAGGGTGACCCGGTTGATATGATGTTGTTCATCATGAAAGGAAATCTGGCTACAATTATTACTTATGGTTGGAAAAACGACTCTCACTCGGACGTTCTTAAGGCTGGCGACTTCTGCGGTGAAGAGCTAGTTCCATGGGCAATGGATCCGCAGTCCACTTCTCTTCCCATTTCAACCAGAACTGTCAAAACTCTAACTGAGGTTGAAGCTTTTGCTCTAAAGGCTAAAGAGCTGCAATCTGTGGTTAGTCTGTTCTACTCTCATCAATGGAAAGTTTGGGCTGCCTATAAAATACAAGAAGCTTGGCATGATTACTGTGAAAGAAAGCGGAGAGGGGGTGGCGATAGCAGGTTTCAAGGTGCATTGGCTAAAACGGTTGGCGCCTCGGCGAGCTTTGGTGCCACTCTATATGCATCCATATTCATATCCCATCTACTGCAAGTTGTGCAGCGAGATCAACACCAGCAGACGTCCCAACTCTCGAGAGTGATGACGCTACCGCCGCCTCCAAAGCCAATCGAGCGAGACTTCACCATCTTGGATCTT 2082 43.61 MSKFMGSLKPKSLRFGYPTSDIHVRYGGYQNRSRLSPASILESIQRKISSASEGFRRMVANLGFKHEDDQSRKKPEFWKKILDPQKPFLQQWNKIFVLSCVLAVAVDPLFFYIPVMDRQHQCLTMDRLLMIIACVLRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDILSIIPLPQLLALVIIPAAKGPIPLKTKNFMKVAVLLQYLPRLFRIYPLYREVTRTSGILTETAWSGAAFNLLIYMLASHVFGAIWYLFSVEQESRCWHEACRKNNCNSKYLYCGDHSRPAYGFIKEYCPHKESEDDKTFNFGIYLEALKFRLTDQTTNFHSKFFYCFWWALRNVGSSGQNLQISNYLGELFFAVFIAILGLVLFALLISNIQKYLQSTTVKVEQMRINRRDAEHWMVHRMLPEDLRQRIRRYDQYKWQLNRGVNEEELISNLPKDLRRDIKRHLCLALLKKVPLFSSMDKQLLDAMCEYLKPVLFTEKSDILQEGDPVDMMLFIMKGNLATIITYGWKNDSHSDVLKAGDFCGEELVPWAMDPQSTSLPISTRTVKTLTEVEAFALKAKELQSVVSLFYSHQWKVWAAYKIQEAWHDYCERKRRGGGDSRFQGALAKTVGASASFGATLYASIFISHLLQVVQRDQHQQTSQLSRVMTLPPPPKPIERDFTILDL 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3180785 3184497 + MC05g0424 Mch5g0470 687889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0470 694 SUPERFAMILY Voltage-gated potassium channels 83 405 - -
Mch5g0470 694 FunFam Cyclic nucleotide-gated ion channel 1 410 474 - -
Mch5g0470 694 CDD CAP_ED 483 594 IPR000595 -
Mch5g0470 694 ProSiteProfiles cAMP/cGMP binding motif profile. 483 567 IPR000595 -
Mch5g0470 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 69 623 - -
Mch5g0470 694 Gene3D - 94 407 - -
Mch5g0470 694 Pfam Ion transport protein 93 409 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0470 694 Gene3D Helix hairpin bin 409 474 - -
Mch5g0470 694 SMART cnmp_10 483 609 IPR000595 -
Mch5g0470 694 Gene3D Jelly Rolls 481 598 IPR014710 -
Mch5g0470 694 SUPERFAMILY cAMP-binding domain-like 412 597 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0470 Mch-Chr5:3180785 Mch8g2727 Mch-Chr8:30492069 1.91E-202 dispersed
Mch5g0470 Mch-Chr5:3180785 Mch5g0471 Mch-Chr5:3187365 0 tandem
Mch10g0545 Mch-Chr10:3574706 Mch5g0470 Mch-Chr5:3180785 1.60E-10 transposed
Mch10g0079 Mch-Chr10:445364 Mch5g0470 Mch-Chr5:3180785 1.08E-131 wgd
Mch5g0470 Mch-Chr5:3180785 Mch6g1858 Mch-Chr6:21088339 3.37E-240 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0470 K05391 - csv:101206492 1041.95