Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0471 ATGGAAGCAGTTTTATGCTTCAAGCATGAATATGATCAGCCGAGGAAGAAACTGGAACTTTCGAAGAAAATTCTTGATCCACAGAAGCCATTTCTTCAGCAATGGAACAAGATATTTGTGCTCTCCTGTGTCCTAGCTGTAGCTGTGGACCCTCTCTTTTTTTACATCCCAGTGATTGATAGGCAACACCAATGCCTAACCATGGACCGGCTCCTTATGATCATTGCTTGCATTCTTCGTTCATTCATCGACATATTCTATCTACTTCACATTATCTTTGAATTCCGAACGGGCTTTCTACCTCCTTCTTTGCCAGTATTTGGAAGTGGCGAACTAGTTGAAGATCCAGCAGCTATAGCAAAGAGATACCTGTCCTCAAACTTCATAATTGATATCTTATCCATTATCCCTCTGCCTCAGCTTTTGGTATTAGTTATCATACCTGCAGCGAAAGGCCCGATTGCATTGAGGACAAAGGACTTCGTGAAGGTTGCGGTTCTTTTGCAGTACATTCCAAGGCTTCTCCGAATTTATCTGCTATACAGAGAAGTAACCAGAACTTCTGGCATACTGACAGAAAGGGCCTGGAGTGGAGCTGCCTTCAATCTTCTTATTTATATGCTAGCTAGTCATGTAGTTGGTGCCATTTGGTATTTGTTTTCAGTAGAACAAGAAGAAAGATGCTGGCTTGAGGCATGCAGAACACGTAACTGTAATAGCAAGGATCTGTGCTGTGGAGATCCCAGCAGAGCGGCATACATTATAAAGCAGTATTGCTCTCATAAAAAATCTGAAGATGACAAGACCTTCAACTTTGGAATGTATCTAGAAGCCCTTAAGTTTCATTTAACCGATCAGACGACGAATTTTCGCGACAAATTCTTTTATTGCTTCTGGTGGGCTCTGCGAAATGTCGGCTCTTGTGGACAGAACCTTCAAATAAGCAATTACTTGGGGGAGGTTCTTTTTGCTGTCTTCATTGCCATCCTTGGTCTGCTCTTGTTTGCGTTACTCATTAGCAATATTCAGAAATATCTGCAATCAACAACTGTTAAAGTAGAGCAGATGAGAATTAGCAGAAGAGACGCCGAGCATTGGATGGCGCATCGTATGCTCCCCGAGGACTTGAGGCAGCGTATTAGACGATACGATCAGTACAAATGGCAGCTAAACAGGGGAGTTAGGGAAGAGGAACTCATCAGTAACCTTCCTAAAGACCTTAGGAGAGACATCAATCGCCATCTTTGCTTGGCTCTGCTTAAGAAAGTGCCACTTTTTAGCAGCATGGATAAGCAATTGCTGGATGCAATGTGCGAATATCTCAAGCCAGTGTTGTTCACAGAGAACAGCAACATTCTGCAAGAGGGTGACCCCATTGATATGATGTTGTTCATCATGAAAGGAAATCTGGCTACAATTATTACTTATGGTTGGAAAAACGACTCTCACTCGGACGTTCTCAAGGCTGGCGACTTCTGCGGTGAAGAGCTAGTTCCGCTAAAGAGCTGCAATCTGTGGTTAGTCAGTTCCACTTCCAGCGCTTCAATAGCCAGCAGTTCCAACTCTCAGTTCTACTCTCATCAATGGAAAGTTTGGGCTGCCTATAAAATACAAGAAGCTTGGCATGATTACTGTGAAAGAAAGCGGAGAGGGGGTGGAGATGGCAGGTTTCAAGATGCATTGGCTAAAACCGCTGGCGCCTCGGCGAGCTTTGGCGCCACTCTATATGCATCCATATTCATATCCCATCTACTGCAAGTTGTGCAGCGAGATCAACACCAGCAGACGTCCCAACTCTCAAGAGTGATGACGCTCCCACCGCCTCCGAAGCCGCTCGAGCAAGACAAGCGAGATTTCACCATCTTGGATCTTTGA 1875 44.43 MEAVLCFKHEYDQPRKKLELSKKILDPQKPFLQQWNKIFVLSCVLAVAVDPLFFYIPVIDRQHQCLTMDRLLMIIACILRSFIDIFYLLHIIFEFRTGFLPPSLPVFGSGELVEDPAAIAKRYLSSNFIIDILSIIPLPQLLVLVIIPAAKGPIALRTKDFVKVAVLLQYIPRLLRIYLLYREVTRTSGILTERAWSGAAFNLLIYMLASHVVGAIWYLFSVEQEERCWLEACRTRNCNSKDLCCGDPSRAAYIIKQYCSHKKSEDDKTFNFGMYLEALKFHLTDQTTNFRDKFFYCFWWALRNVGSCGQNLQISNYLGEVLFAVFIAILGLLLFALLISNIQKYLQSTTVKVEQMRISRRDAEHWMAHRMLPEDLRQRIRRYDQYKWQLNRGVREEELISNLPKDLRRDINRHLCLALLKKVPLFSSMDKQLLDAMCEYLKPVLFTENSNILQEGDPIDMMLFIMKGNLATIITYGWKNDSHSDVLKAGDFCGEELVPLKSCNLWLVSSTSSASIASSSNSQFYSHQWKVWAAYKIQEAWHDYCERKRRGGGDGRFQDALAKTAGASASFGATLYASIFISHLLQVVQRDQHQQTSQLSRVMTLPPPPKPLEQDKRDFTILDL 624
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3187365 3190345 + MC05g_new0047 Mch5g0471 687890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0471 624 ProSiteProfiles cAMP/cGMP binding motif profile. 425 526 IPR000595 -
Mch5g0471 624 SUPERFAMILY cAMP-binding domain-like 355 498 IPR018490 -
Mch5g0471 624 SMART cnmp_10 425 543 IPR000595 -
Mch5g0471 624 SUPERFAMILY Voltage-gated potassium channels 26 347 - -
Mch5g0471 624 Gene3D - 37 349 - -
Mch5g0471 624 Pfam Ion transport protein 36 351 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0471 624 CDD CAP_ED 425 498 IPR000595 -
Mch5g0471 624 Gene3D Helix hairpin bin 351 416 - -
Mch5g0471 624 Gene3D Jelly Rolls 423 536 IPR014710 -
Mch5g0471 624 FunFam Cyclic nucleotide-gated ion channel 1 352 416 - -
Mch5g0471 624 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 13 501 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0471 Mch-Chr5:3187365 Mch6g1858 Mch-Chr6:21088339 7.57E-213 dispersed
Mch5g0470 Mch-Chr5:3180785 Mch5g0471 Mch-Chr5:3187365 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0471 K05391 - csv:101206492 841.262