Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0487 ATGAAGATTGAGAACGGGTTGCGGAGTGTGGGTGGGAAGGATGAGGATAAGACAGTGGTTGCTGCCGTTCTGGGGACTCGAGCTTTTAATTACTTGATGTCTTGCTCTGTTTCGAACGAGAATCTGTTTATGGCTGTGAGGAATGATGAGAATTTGCAGAACAAGCTCTCGGATCTGGTGGAAAGGCCTAACGCCTCCAATTTCAGCTGGAACTATGCAATTTTCTGGCAACTTTCCCATTCAAAATCTGGTGAATGGGTTTTGGGATGGGGGGATGGATCGTGTAGGGACCCCAGGGATGGAGAGGAAACAGAGGCTACGCAAATTCTTAGTCTTCGGCTCGAAGACGACAGCCAGCAGAGGATGAAGAAAAGGGCTCTGCAGAAGCTTCACATGCTGTTTGGAGGCTCTGATGAGGATAATTATGCTCTTGGATTGGACAGGGTTACTGACACTGAAATGTTTTTTCTTGCTTCCATGTATTTCTCCTTCCCTCGTGGAGAGGGGGGCCCTGGAAAGTGTCTTGCGTCTGGGAAACATATCTGGCTTTTGGATGTGCTCAATTCGCCGGCTGAGTATTGCGTGAGATCGTATCTCGCTAAATCTGCAGGAATTCGGACGGTTGTTCTGGTACCAACTGATGTTGGAGTAGTTGAATTGGGTTCTGTGAGATCCGTGAGTGAGAGCTTAGAATTAGTGCAGTTCATTAGATCATTGTTTTCATCTCAAAATTCTCTTGATAGAGTGAGGTCATCTGCTCCGATGTCGATGATGGCTGAAAGAAAAGATGAAAACACCCCGTTTGTGAGTCCAGGGATTGCAGAAAGAGCAGAAGGGGGGATTCCTAAGGTTTTTGGGCAGAGTTTGAACTTGGGGAGCATGGGTAGATCTCATTTCAGAGAGAAACTGGCGATTAGGAAGATGGATGAGAGGTCATGGGAAGCTTGTGCTAATGGAGGTAGAATTCAGTTTCAAAGCCCCCGAAATGGCATTCACAGCCCGAGTTTAGCACATGTTCATAGTCTCAAACAGGGGAATCCGACAGAAATTTATGGTTCTCCAACTCCACCAGCAAATAATAATCACGAGCAGCAGCTCGTCAATGGAGTCAGAGATGATTTTTGTCGTAATCCGTATCAATCACAGAAGCTGGTCCAGATGCAAATTGATTTTTCTGTGGCAACATCAAGGCCTTCTGTGGTCACCCGTGTAGGTGGAGATTCGGAGCATTCAGACGTAGAGCCTCAATGCAAAGAAGAGGGGCTTGGCACTGATGAAAGACGACCACGCAAGCGAGGCAGAAAGCCTGCCAATGGTAGGGAGGAGCCACTAAATCACGTGGAGGCGGAGAGACAGCGCCGTGAGAAGTTGAACCAGCGGTTCTATGCTTTACGAGCTGTCGTGCCCAATATCTCCAAGATGGACAAAGCTTCACTGCTTGGTGATGCCATTGCTTACATTAATGAGCTTCAAGCAAAAGTCAAGGCCATGGAATTCGAACGCGAGAAATCTGGTATCACCTCAAGTGATGCAACCCCTTCGGAGGTGAACCCAGAAATAGAAAATAAAGATCTATACCCTGATGTCGACGTCGACGTTGAAGCTTCCCATGATGGAGTCATCGTGAAGGTCAGCTGCCCGTTGGAATCACACCCTGCATCAAGAGTTATCAAGGCAATGAAAGATGCTCAGATCAATGTTGTTGATTCAAAACTTTCTGAAGAAAATGACACAGTTTTGCACACATTTATCATCAAATCTCCAGGATCCGAGCAACTGACGAAGGAACAGTTGATAGCTGCGTTTTCGCGGGACTCCAATCCATTACATGCTCTATCAACAGTTGGGTAG 1851 46.89 MKIENGLRSVGGKDEDKTVVAAVLGTRAFNYLMSCSVSNENLFMAVRNDENLQNKLSDLVERPNASNFSWNYAIFWQLSHSKSGEWVLGWGDGSCRDPRDGEETEATQILSLRLEDDSQQRMKKRALQKLHMLFGGSDEDNYALGLDRVTDTEMFFLASMYFSFPRGEGGPGKCLASGKHIWLLDVLNSPAEYCVRSYLAKSAGIRTVVLVPTDVGVVELGSVRSVSESLELVQFIRSLFSSQNSLDRVRSSAPMSMMAERKDENTPFVSPGIAERAEGGIPKVFGQSLNLGSMGRSHFREKLAIRKMDERSWEACANGGRIQFQSPRNGIHSPSLAHVHSLKQGNPTEIYGSPTPPANNNHEQQLVNGVRDDFCRNPYQSQKLVQMQIDFSVATSRPSVVTRVGGDSEHSDVEPQCKEEGLGTDERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKVKAMEFEREKSGITSSDATPSEVNPEIENKDLYPDVDVDVEASHDGVIVKVSCPLESHPASRVIKAMKDAQINVVDSKLSEENDTVLHTFIIKSPGSEQLTKEQLIAAFSRDSNPLHALSTVG 616
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3250061 3253374 - MC05g0439 Mch5g0487 687906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0487 616 MobiDBLite consensus disorder prediction 402 452 - -
Mch5g0487 616 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 240 IPR025610 -
Mch5g0487 616 CDD bHLH_AtAIB_like 438 511 - -
Mch5g0487 616 Gene3D - 434 504 IPR036638 GO:0046983(InterPro)
Mch5g0487 616 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 444 502 IPR036638 GO:0046983(InterPro)
Mch5g0487 616 PANTHER MYC 41 604 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Mch5g0487 616 FunFam Transcription factor bHLH13 434 507 - -
Mch5g0487 616 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 441 490 IPR011598 GO:0046983(InterPro)
Mch5g0487 616 MobiDBLite consensus disorder prediction 407 452 - -
Mch5g0487 616 Pfam Helix-loop-helix DNA-binding domain 445 491 IPR011598 GO:0046983(InterPro)
Mch5g0487 616 SMART finulus 447 496 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1749 Mch-Chr10:17405570 Mch5g0487 Mch-Chr5:3250061 8.48E-27 dispersed
Mch4g0838 Mch-Chr4:5926969 Mch5g0487 Mch-Chr5:3250061 3.56E-16 dispersed
Mch5g0487 Mch-Chr5:3250061 Mch6g2179 Mch-Chr6:24128359 1.44E-66 dispersed
Mch5g0487 Mch-Chr5:3250061 Mch10g1654 Mch-Chr10:16658991 2.90E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43342 PF14215 bHLH-MYC_N 5.10E-54 CL0161 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0487 - - - 0.0