Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0500 ATGGAATCTCCTGATACGTTCGTGGAGAAAGATCCAACTGGTCGATACGTTCGGTACGATGAAATCTTGGGAAGAGGCGCTTTCAAGGCAGTTTACAAGGCATTTGATGAAGTTGATGGAATTGAAGTTGCCTGGAACCAAGTAAGGATTGATGGTTTCTTGCAGTCACCTGAGGATTTGGAAAAGTTGTACTCCGAAGTACATCTACTGAAATCATTAAAACATGAGAATATTATCAAGTTCTACAATTCTTGGGTGGATGATAAGAATAAAACAGTCAACATGATCACTGAGCTCTTCACATCTGGGAGTTTGAGGCAATACCGTAAAAAGCATAAACATGTTGATATGAAGGCCATAAAGAATTGGGCACGACAGGTTCTCCGTGGTTTGGTGTATCTTCACAGTCACGATCCTCCTATTGTTCACAGAGATTTGAAAGGGGATAATATTTTTATTAATGGAAATCATGGAGAAGTCAAAATTGGAGATCTTGGATTGGCAATTGTCATGCAGCAGCCGACCGCTCGAAGTGTCATTGGAACTCCTGAGTTTATGGCTCCTGAGCTTTATGAAGAGGAGTACAATGAGCTTGTTGATGTATATTCTTTTGGTATGTGCATGCTGGAGATGGTTGCCTTTGAGTACCCATATAGTGAATGTAAAAATCCAGCTCAGATCTATAAGAAAGTTACATCTGGTATTAAACCTTCTTCCCTTGCTAAGGTAACTGATCCACAGACTATGGAGTTTATCAATAAATGTCTGGTTCCAGCGACTGAGAGACTGTCTGCAACAGAGCTTCTTAAAGATCCCTTTCTTCGAGTTGAGAACCCAAAGGAGTCGACACGTGATCCCCTACAGTTGCCTAACCTCATTCCGAGATCAATAAATTTGATGAAGAGTGAGCCTATTTCCATGGACATAGACATTGACCACAGACAAAATTCGTTAAGCACTTGTGCAGGAAGCAGTGGTGAGAGTCCACGCCTTCCAGTCATGGAATTCCAAACAAAGAATAAGAACCATGAGTTCAGATTACGTGGAAATAAGAACGACGACAACTCGGTGGCGTTAACCTTGCGTATTGCAGACTCAAATGGTCGAGTGAAGAATATTCATTTTACCTTTTATCTCGATTCTGATACTGCACTATCAGTGGCAGCTGAAATGGCTGAACAATTGGAGTTAGTAACTCATGATGTGGATTTCATAGCAGAATTTATAGACTTTGTAATCACAAAACTTATACCTGGTTGGAAGCCTTTGTCTGATTATTCCTCAAGTGAAGCAATAAGTCTTTGTGGCGGCCCCTATATACTTACAAACACCAAATCATCTGTCCCATCTACATGTAATTCAGTTTTAAGTGGGGTTCTAGATGGGTTGGTCGAACAAGACGTTTCATCTGGGTTAGTGAGTACTCAAAAGGACTGTCTGCAATCTGAGGAAGAAGGCTGGACTGATGGCTTTCCCGATAGTCATATTTTCAATACTGGTGGTTGCCCTTCTCCCAGTTTGGGTAATTTTGAGGACATCCCGGATTCACAAGCTTCATTTGCATCAGAGACATTGGTTGAAGATAGTTCTACCACAATCGGTAAGGTGATAGATTGTTCCAATATTGATGGAAGCTCAAAAGGCTCGAGTTGGTCGATTGCCGATCTAGAGCTCCATGGTTCATCATATGTTGATGACAAGTTGCAAATAAATGGTAGTGATGTTGGAATTTTCACTCCCATGGACTATTTTGTTAAGAATTCAGTCATGTCATTGCCTCTTCCAAGTGGAGTTTCTACTAATGTGATGAGCTTGACGAGCAGCTGTTCTTCGCTTTCCTTAGCGGACAAGGATCTGGAAGCTGAGTTCAAGTTGGAACTGAATGCTGTAGAGATGTATTATCAGCAGCTGTTCGAAGAGGTTTCTCGGATGAGGGAGGAAGCACTAGAGGCCACCAGAAAGAGATGGATTGAAAAGAAACTTATTCATTAA 1992 41.37 MESPDTFVEKDPTGRYVRYDEILGRGAFKAVYKAFDEVDGIEVAWNQVRIDGFLQSPEDLEKLYSEVHLLKSLKHENIIKFYNSWVDDKNKTVNMITELFTSGSLRQYRKKHKHVDMKAIKNWARQVLRGLVYLHSHDPPIVHRDLKGDNIFINGNHGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDVYSFGMCMLEMVAFEYPYSECKNPAQIYKKVTSGIKPSSLAKVTDPQTMEFINKCLVPATERLSATELLKDPFLRVENPKESTRDPLQLPNLIPRSINLMKSEPISMDIDIDHRQNSLSTCAGSSGESPRLPVMEFQTKNKNHEFRLRGNKNDDNSVALTLRIADSNGRVKNIHFTFYLDSDTALSVAAEMAEQLELVTHDVDFIAEFIDFVITKLIPGWKPLSDYSSSEAISLCGGPYILTNTKSSVPSTCNSVLSGVLDGLVEQDVSSGLVSTQKDCLQSEEEGWTDGFPDSHIFNTGGCPSPSLGNFEDIPDSQASFASETLVEDSSTTIGKVIDCSNIDGSSKGSSWSIADLELHGSSYVDDKLQINGSDVGIFTPMDYFVKNSVMSLPLPSGVSTNVMSLTSSCSSLSLADKDLEAEFKLELNAVEMYYQQLFEEVSRMREEALEATRKRWIEKKLIH 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3335719 3340057 + MC05g0451 Mch5g0500 687919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0500 663 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 410 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Mch5g0500 663 SMART serkin_6 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0500 663 Gene3D - 355 419 - -
Mch5g0500 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 5 648 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch5g0500 663 Pfam Protein kinase domain 20 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0500 663 Coils Coil 634 654 - -
Mch5g0500 663 SUPERFAMILY Protein kinase-like (PK-like) 19 275 IPR011009 -
Mch5g0500 663 Gene3D Phosphorylase Kinase; domain 1 1 98 - -
Mch5g0500 663 ProSiteProfiles Protein kinase domain profile. 17 274 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0500 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0500 663 FunFam probable serine/threonine-protein kinase WNK9 100 279 - -
Mch5g0500 663 FunFam Probable serine/threonine-protein kinase WNK1 2 98 - -
Mch5g0500 663 CDD STKc_WNK 15 274 - -
Mch5g0500 663 Gene3D Transferase(Phosphotransferase) domain 1 100 279 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0500 Mch-Chr5:3335719 Mch6g2340 Mch-Chr6:25294586 8.65E-205 dispersed
Mch5g0500 Mch-Chr5:3335719 Mch8g2922 Mch-Chr8:31967533 1.12E-153 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77396 PF00069 Pkinase 6.00E-53 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0500 K08867 - csv:101204101 1040.41