Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0510 ATGTTCAACTGGCTTCACTCCAACTTCCACTACAATCCTCTTAAAGCTGAGTCTAAACGAAATGTGTGGAGAAAGAACACAAAATCTGTGGCAAAGCATGTTGATGAGATCTTCGATGTTCTTGAGGATTGGAGAATCAATGGTCGGCGTCTTACAATTTGCGTTGTGGGGTTTGAGAGATCATCAAAACCCAGAAATTATCCAACGGAATATTGCAATTTGAAGAAGGAGGGGAAGAGATCAGATGAAGTTGTAGATGATGATCTTAATGATGATGATGATGATGAGCTGAGCCCATTAATGGCGACGACATTTCAGAACAACTTCGACGACAGTGGTGAGTTCTGTATTGCGGAGCTTTTCATGGCGGATGCTGATGTGAAGCCGAAACCGGCGCCGGAGGAGAACGTGGCGGCGCGGAAGAAACCGGAAGTTAAGACGGCGAACGGCAGCTGCTCGGCCAAGAAGCCGAAGGAGGCGGCGAAGCCAGCTGGGAGAAGTCTCCGGCGATTTATTGTGGCAGGAATGGGTTCAGATCCCAAGGTTTTCGCCTTCGATGAAGTGGCTAAACACAATCACCAGCGGGATTGCTGGCTTATAATCTCTGGAAAGGTATATGATGTCACCCCTTTTCTGGAAGAACATCCTGGAGGTGATGAAGTCTTGATATTAGCTTCTGAAAAAGATGCAACTGATGATTTTGAAAATGTGGGTCACAGTCTATCTGCCATAGACCAAATGGAACAATATTATGTTGGCAACGTTGACATGTCTACTGTTCCAAAGCCAATCGATTACCGACCACCTGCATCGCAATCAGCAACGACTCTTGCATCGGCTCAATCTTCAGGATCTTCACTAAAACTACTGCAATTTCTGATTCCCCTGCTGCTTATAGGTGTTGCATTTTATATGCAATTCTATGGCAAAAAACAGTAA 939 45.26 MFNWLHSNFHYNPLKAESKRNVWRKNTKSVAKHVDEIFDVLEDWRINGRRLTICVVGFERSSKPRNYPTEYCNLKKEGKRSDEVVDDDLNDDDDDELSPLMATTFQNNFDDSGEFCIAELFMADADVKPKPAPEENVAARKKPEVKTANGSCSAKKPKEAAKPAGRSLRRFIVAGMGSDPKVFAFDEVAKHNHQRDCWLIISGKVYDVTPFLEEHPGGDEVLILASEKDATDDFENVGHSLSAIDQMEQYYVGNVDMSTVPKPIDYRPPASQSATTLASAQSSGSSLKLLQFLIPLLLIGVAFYMQFYGKKQ 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3382257 3389269 + MC05g0461 Mch5g0510 687929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0510 312 Gene3D - 177 259 IPR036400 -
Mch5g0510 312 FunFam Cytochrome b5 type B 177 260 - -
Mch5g0510 312 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 179 269 IPR036400 -
Mch5g0510 312 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 211 218 IPR018506 GO:0020037(InterPro)
Mch5g0510 312 MobiDBLite consensus disorder prediction 130 162 - -
Mch5g0510 312 SMART Cyt_b5_2 183 256 IPR001199 -
Mch5g0510 312 PANTHER CYTOCHROME B5 178 308 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Mch5g0510 312 PRINTS Cytochrome B5 signature 205 215 IPR001199 -
Mch5g0510 312 PRINTS Cytochrome B5 signature 230 237 IPR001199 -
Mch5g0510 312 PRINTS Cytochrome B5 signature 215 229 IPR001199 -
Mch5g0510 312 PRINTS Cytochrome B5 signature 243 255 IPR001199 -
Mch5g0510 312 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 180 256 IPR001199 -
Mch5g0510 312 Pfam Cytochrome b5-like Heme/Steroid binding domain 186 255 IPR001199 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0510 K23490 - - csv:101205000 202.216
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0510 Mch-Chr5:3382257 Mch7g0872 Mch-Chr7:13249802 1.86E-41 dispersed
Mch5g0510 Mch-Chr5:3382257 Mch6g1825 Mch-Chr6:20818771 7.86E-46 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
Mch6g1825 . 1 135 NADPH P450 reductases AT5G53560 78.5 1.1e-58 222.6
Mch5g0194 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.0e-51 199.5
Mch7g0872 . 50 184 NADPH P450 reductases AT5G53560 66.7 9.7e-50 193.0
Mch6g2268 . 8 136 NADPH P450 reductases AT5G53560 65.9 1.3e-46 182.6
Mch6g2268 . 3 134 NADPH P450 reductases AT5G48810 62.7 7.3e-48 186.8
Mch7g0872 . 50 182 NADPH P450 reductases AT5G48810 63.0 2.1e-47 185.3
Mch5g0194 . 1 132 NADPH P450 reductases AT5G48810 64.2 2.8e-47 184.9
Mch6g1825 . 1 134 NADPH P450 reductases AT5G48810 58.1 3.7e-44 174.5
Mch5g0510 . 176 312 NADPH P450 reductases AT5G48810 51.1 7.6e-37 150.2
Mch5g0194 . 22 135 NADPH P450 reductases AT2G32720 84.2 6.7e-51 196.8
Mch7g0872 . 71 182 NADPH P450 reductases AT2G32720 78.6 1.3e-46 182.6
Mch6g2268 . 23 134 NADPH P450 reductases AT2G32720 69.6 3.4e-42 167.9
Mch6g1825 . 22 133 NADPH P450 reductases AT2G32720 66.1 7.0e-40 160.2
Mch8g0144 . 1 130 NADPH P450 reductases AT1G26340 59.7 1.1e-40 162.9
Mch5g1349 . 2 243 NADPH P450 reductases AT5G17770 87.6 1.9e-124 442.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014357 0 2 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 1 0 1 1 1 1 1 1 1 0 22