Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g0519 | ATGATTACAAATAAACAAATGCAACGAAAAGATGTGGAAGAGAGAAGATCGGCCACGGAACATTCTTTCGTTCCGAAACGACGGTCCCACCTTATCCAATTGGGCCTCCTTCGCGCGTCTTTTTCCCCAATTCCTCCGATTCCACCTTTTTTTTGTTTGTATTTCCTGAATCAGTTCCAAACGACCAATTTGTTTTTGGAGCATTGCCGATTTAACATCGTTAATTTAGTTTCCCAATTCTTTATATTCCTTTTCGCCGACGGGGGGTGGAGAATGAACGTGAAAACTCCGGCGACGCGGACTCGGGTTGGGAAGTACGAGCTCGGTAAAACCCTCGGCGAGGGCACTTTTGCAAAGGTCAAATTCGCGAAGAACGTTGAGACCGGTGATTATGTCGCCATCAAGATTCTCGACCGTGAAAAAGTTCTTCGCCACAAGATGGTCGAACAGATTAAAAGAGAGATATCGACTTTGAAACTGATAAAGCATCCGAACGTTGTTAAGATTTACGAGGTTATGGCAAGCAAATCGAAAATCTACATTGTCCTGGAGTTTGTGGATGGAGGCGAGCTCTTTGACAAAATAGCTGCAAAGGGAAGGCTTAAAGAGGATGAAGCTAGGAGATATTTCCAGCAACTTATTAATGCTGTAGATTACTGCCATAGTAGAGGCGTGTACCATCGAGATCTGAAGCCTGAAAATCTTCTTCTGGACTCACACGATGTTCTTAAAGTATCAGATTTTGGATTGAGTGCATTTCCGCAGCAAGTACGAGCGGATGGCCTGCTTCACACTGCCTGTGGAACCCCAAACTATGTAGCTCCCGAGGTGTTCAAGGACAAAGGTTATGATGGTACATCATCAGATATTTGGTCTTGCGGGGTCATTCTCTTCGTTCTAATGGCTGGCTTCTTGCCTTTCGATGAGCCAAATCTAATGTCTTTGTATAGAAAAATTTCCAAGGCCGATTTCAGCTTTCCACCATGGTTCTCAAATGGTGCTAAAAAGTTAGTTCGTCGCATTCTTGATCCAAACCCTCTTACACGAATAACAATAGCTGAAATTCAAGAAAATGAATGGTTCAAAAAGGGCTTCACACCTGCTCATTTTGAAGTGGAAGAGGATATAACTCTCGATGATGTTGATGCCGCATTTAGCAGCTCGAGGGAAAACCTTATAACAGAAAGAAAAGAAAAGCCAGTGTCCATGAATGCTTTTGAGCTTATCTCTAGGTCACCGGGGTTCAGTCTCGAAAATTTATTTGAGAAGCAGAAGGCTGATGCAAAGAGAGAAACTCGTTTTACTTCACAAAGCCCTGCAAACGAGATCATGTCGAAGATTGAAGAGACTGCAAAACCTTTGGGCTTCAATGTTCGGAAGCGGGACTATAAGATGAAGTTGCAAGGTGACAAGACTGGGAGGAAAGGACAACTCTCCATAGCTACTGAGGTGTTTGAGGTGGCTCCTTCCTTGCATATGGTCGAGCTTCGGAAAACTGGTGGCGACACGCTTGAGTTCCACAAGTTCTACAAAACTTTCTCTTCGGGACTAAAAGACATAATGTGGAGAACTGATGAAAATACTGTTGAAGGGAGCTAA | 1599 | 43.65 | MITNKQMQRKDVEERRSATEHSFVPKRRSHLIQLGLLRASFSPIPPIPPFFCLYFLNQFQTTNLFLEHCRFNIVNLVSQFFIFLFADGGWRMNVKTPATRTRVGKYELGKTLGEGTFAKVKFAKNVETGDYVAIKILDREKVLRHKMVEQIKREISTLKLIKHPNVVKIYEVMASKSKIYIVLEFVDGGELFDKIAAKGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDSHDVLKVSDFGLSAFPQQVRADGLLHTACGTPNYVAPEVFKDKGYDGTSSDIWSCGVILFVLMAGFLPFDEPNLMSLYRKISKADFSFPPWFSNGAKKLVRRILDPNPLTRITIAEIQENEWFKKGFTPAHFEVEEDITLDDVDAAFSSSRENLITERKEKPVSMNAFELISRSPGFSLENLFEKQKADAKRETRFTSQSPANEIMSKIEETAKPLGFNVRKRDYKMKLQGDKTGRKGQLSIATEVFEVAPSLHMVELRKTGGDTLEFHKFYKTFSSGLKDIMWRTDENTVEGS | 532 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3443746 | 3449497 | + | MC05g0469 | Mch5g0519 | 687938 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g0519 | 532 | Pfam | Protein kinase domain | 106 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch5g0519 | 532 | FunFam | Non-specific serine/threonine protein kinase | 397 | 523 | - | - | |
| Mch5g0519 | 532 | Pfam | NAF domain | 400 | 460 | IPR004041 | GO:0007165(InterPro) | |
| Mch5g0519 | 532 | SUPERFAMILY | Protein kinase-like (PK-like) | 103 | 378 | IPR011009 | - | |
| Mch5g0519 | 532 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
| Mch5g0519 | 532 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 90 | 507 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| Mch5g0519 | 532 | ProSiteProfiles | NAF domain profile. | 398 | 422 | IPR018451 | GO:0007165(InterPro) | |
| Mch5g0519 | 532 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 225 | 237 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch5g0519 | 532 | SMART | serkin_6 | 106 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch5g0519 | 532 | Gene3D | Kinase associated domain 1, KA1 | 397 | 523 | - | - | |
| Mch5g0519 | 532 | ProSiteProfiles | Protein kinase domain profile. | 106 | 361 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch5g0519 | 532 | Gene3D | Transferase(Phosphotransferase) domain 1 | 186 | 366 | - | - | |
| Mch5g0519 | 532 | Gene3D | Phosphorylase Kinase; domain 1 | 95 | 185 | - | - | |
| Mch5g0519 | 532 | CDD | STKc_SnRK3 | 105 | 360 | - | - | |
| Mch5g0519 | 532 | FunFam | Non-specific serine/threonine protein kinase | 97 | 185 | - | - | |
| Mch5g0519 | 532 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
| Mch5g0519 | 532 | FunFam | Non-specific serine/threonine protein kinase | 99 | 401 | - | - | |
| Mch5g0519 | 532 | ProSitePatterns | Protein kinases ATP-binding region signature. | 112 | 135 | IPR017441 | GO:0005524(InterPro) | |
| Mch5g0519 | 532 | CDD | CIPK_C | 404 | 519 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch1g2058 | Mch-Chr1:19954912 | Mch5g0519 | Mch-Chr5:3443746 | 1.56E-228 | dispersed | |
| Mch3g0968 | Mch-Chr3:13528969 | Mch5g0519 | Mch-Chr5:3443746 | 4.13E-229 | dispersed | |
| Mch5g0519 | Mch-Chr5:3443746 | Mch6g0715 | Mch-Chr6:4914990 | 8.64E-174 | dispersed | |
| Mch7g0485 | Mch-Chr7:7481364 | Mch5g0519 | Mch-Chr5:3443746 | 3.33E-46 | transposed | |
| Mch7g0771 | Mch-Chr7:12338304 | Mch5g0519 | Mch-Chr5:3443746 | 3.95E-82 | transposed | |
| Mch8g2446 | Mch-Chr8:27426918 | Mch5g0519 | Mch-Chr5:3443746 | 1.19E-79 | transposed | |
| Mch5g0519 | Mch-Chr5:3443746 | Mch6g1818 | Mch-Chr6:20780551 | 1.56E-43 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77397 | PF00069 | Pkinase | 8.20E-72 | CL0016 | Mch | PK |
Pathway information