Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g0538 | AAGGTGAACCATGGTAATCTAGTGAAGCTTGAAGGCTTCTGCATTGACCCGGAAGATGCAAGCTGCTACCTAGTATATGAATATGTAGAGAATGGTTCTCTTTATTCGTGGCTACACAGAAGCGAGAAGCGGAAATTGAGTTGGAGAATGAGATTGAGGGTCGCCATCGACGTCGCTAACGGGCTACTCTACATCCACGAGCACACGAGGCCACGAGTCGTGCACAAAGACATTAAAAGCAGCAACATTTTGTTGGATGCAAACATGAGGGCTAAGATAGCCAACTTTGGGCTGGCCAAGTCAGGCTGCAACGCCATAACCATGCATATTGTTGGAACTCAAGGCTATATAGCACCCGAGTACATAGCGGATGGAGTCGTGTCGACGAAGATGGACATCTTCTCATTCGGAGTTGTGTTGCTCGAGCTCATCTCGGGGAGGGAG | 444 | 48.65 | KVNHGNLVKLEGFCIDPEDASCYLVYEYVENGSLYSWLHRSEKRKLSWRMRLRVAIDVANGLLYIHEHTRPRVVHKDIKSSNILLDANMRAKIANFGLAKSGCNAITMHIVGTQGYIAPEYIADGVVSTKMDIFSFGVVLLELISGRE | 148 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 3578965 | 3579408 | - | MC05g0485 | Mch5g0538 | 687957 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g0538 | 148 | SMART | serkin_6 | 1 | 148 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch5g0538 | 148 | ProSiteProfiles | Protein kinase domain profile. | 1 | 148 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Mch5g0538 | 148 | Gene3D | Transferase(Phosphotransferase) domain 1 | 1 | 148 | - | - | |
| Mch5g0538 | 148 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 73 | 85 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Mch5g0538 | 148 | FunFam | Os07g0541700 protein | 29 | 113 | - | - | |
| Mch5g0538 | 148 | PANTHER | LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED | 1 | 148 | IPR052611 | - | |
| Mch5g0538 | 148 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 147 | IPR011009 | - | |
| Mch5g0538 | 148 | Pfam | Protein kinase domain | 1 | 147 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g0538 | Mch-Chr5:3578965 | Mch8g0742 | Mch-Chr8:5250409 | 1.41E-46 | dispersed | |
| Mch5g0538 | Mch-Chr5:3578965 | Mch6g0807 | Mch-Chr6:5618986 | 8.73E-40 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 77398 | PF07714 | PK_Tyr_Ser-Thr | 3.50E-33 | CL0016 | Mch | PK |
Pathway information