Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0540 | ATGATTGTTATTTGTCAGTCAAGGCAAGGGTATTTTGGTAAAAGTGTAGCCACAAATTGGAAATTTGAACAGTGGGTGACAGCTAGTTCCATGCAACCGATGGGAATACATTATAAAAACCTAAATGCCAGTGCCTTCGTTACAAGACCTCTTAATTCTACCGCCATGGAGCCAGGCACAGCTCCGCCGTCCACCGCCGTCACCCTTCTTGGAAAGTACCGTTTGGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACCAAGCAATTTCATTAACCGACAACGCCACCGTCGCCATCAAAATCATCGACAAAGCCAAAACCAAAACCTTCGGCGCCGCCCTGGAGCGCTGCATAGTCCGGGAGGTCGCCGCCATGCGCCGCCTCGACCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACGAAATCCAAGATCTACCTGGTGGTCGAATTCGCAGCCGGCGGCGAACTCCTCGCGAAAATCTCCCGCCGGAGACGGTTCGCCGAACCGGCCTCGCGCCGGCTCTTCCAACAGCTCGTCTCGGCGCTCAACTTCTGCCACGAAAACGGCGTCGTTCACCGCGATCTGAAGCCGCAGAATCTGTTACTAGACGAACAGGGGAATTTGAAAATCTCCGACTTCGGGCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACCGCCTGCGGAACTCCGGCGTACTCCGCGCCGGAAGTCATGCTCCAGCGCGGCGGCGGCGGATACGACGGCGCCAAGGCGGAGGCGTGGTCATGTGGGGTAATTTTATTCGTATTGCTTTCCGGATCCCTCCCTTTCGACGACGGTAACCTCGTGGCGATGTACAAGAAAATCCACCGGCGGGATTTTCAATTCCCAAATTGGATTTCGAAACCGGCCCGATTCGTAATCTACCACCTCCTGGATCCGAATCCGGAGACGAGGATGAGCATCGAGGGGATTATGCAAAACCCCTGGTTCAAGAAATCGCTGCGATTGAAACAGAGCAACGGAAATTGCGAGAGCGTGTTGCAATCGATTAATGATTACAGAGTTGGGGAAACGAACGCGTTCGATTTGATTTCGATGTCGTCGGGGTTGGACTTGTCGGGGATGTTCGAGGCGGCGGAGCAGAGGGCGGAGAGGAGGTTTACGGCGAGGGTGGGGATGAAGGAGGTGGAGGAGAGGGTGAGGGAGATCGGAGAGGAGCTGGGGTATGCGGTGGCGGCGAAGGGAGCGGCGATCGGAATGGGGAAGGGGAGGGTGGTTGTGGTGGTGGAGGTGGTGGAGGTGGCGGCGGCGGCGGCGGCGATGGTGGAGGTGAGAGTGGTGAAAGGAGGGGCGGAGTTTGGAGAGCTCCATTGGGGGTGTTTCGAGAAGAAGCTTGAAGGTATTGCTGTTCCATGGCAGACGAAATGCAATCTGTGA | 1446 | 56.29 | MIVICQSRQGYFGKSVATNWKFEQWVTASSMQPMGIHYKNLNASAFVTRPLNSTAMEPGTAPPSTAVTLLGKYRLGRLLGRGSFAKVYQAISLTDNATVAIKIIDKAKTKTFGAALERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELLAKISRRRRFAEPASRRLFQQLVSALNFCHENGVVHRDLKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMLQRGGGGYDGAKAEAWSCGVILFVLLSGSLPFDDGNLVAMYKKIHRRDFQFPNWISKPARFVIYHLLDPNPETRMSIEGIMQNPWFKKSLRLKQSNGNCESVLQSINDYRVGETNAFDLISMSSGLDLSGMFEAAEQRAERRFTARVGMKEVEERVREIGEELGYAVAAKGAAIGMGKGRVVVVVEVVEVAAAAAAMVEVRVVKGGAEFGELHWGCFEKKLEGIAVPWQTKCNL | 481 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 3592707 | 3594369 | - | MC05g_new0055 | Mch5g0540 | 687959 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0540 | 481 | CDD | CIPK_C | 362 | 419 | - | - | |
Mch5g0540 | 481 | Gene3D | Transferase(Phosphotransferase) domain 1 | 158 | 358 | - | - | |
Mch5g0540 | 481 | ProSiteProfiles | Protein kinase domain profile. | 73 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0540 | 481 | FunFam | Aurora kinase A | 66 | 159 | - | - | |
Mch5g0540 | 481 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 195 | 207 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Mch5g0540 | 481 | Gene3D | Kinase associated domain 1, KA1 | 359 | 473 | - | - | |
Mch5g0540 | 481 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 68 | 448 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Mch5g0540 | 481 | Gene3D | Phosphorylase Kinase; domain 1 | 62 | 157 | - | - | |
Mch5g0540 | 481 | SMART | serkin_6 | 73 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0540 | 481 | SUPERFAMILY | Protein kinase-like (PK-like) | 70 | 345 | IPR011009 | - | |
Mch5g0540 | 481 | Pfam | NAF domain | 362 | 414 | IPR004041 | GO:0007165(InterPro) | |
Mch5g0540 | 481 | Pfam | Protein kinase domain | 73 | 333 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Mch5g0540 | 481 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524(InterPro) | |
Mch5g0540 | 481 | FunFam | Non-specific serine/threonine protein kinase | 64 | 356 | - | - | |
Mch5g0540 | 481 | ProSiteProfiles | NAF domain profile. | 356 | 380 | IPR018451 | GO:0007165(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0540 | Mch-Chr5:3592707 | Mch6g0631 | Mch-Chr6:4301878 | 2.27E-104 | dispersed | |
Mch9g1833 | Mch-Chr9:20125759 | Mch5g0540 | Mch-Chr5:3592707 | 5.91E-39 | dispersed | |
Mch5g0540 | Mch-Chr5:3592707 | Mch7g1020 | Mch-Chr7:14380900 | 1.36E-179 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77399 | PF00069 | Pkinase | 2.60E-65 | CL0016 | Mch | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0540 | K12761 | - | csv:101217555 | 598.586 |