Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0540 ATGATTGTTATTTGTCAGTCAAGGCAAGGGTATTTTGGTAAAAGTGTAGCCACAAATTGGAAATTTGAACAGTGGGTGACAGCTAGTTCCATGCAACCGATGGGAATACATTATAAAAACCTAAATGCCAGTGCCTTCGTTACAAGACCTCTTAATTCTACCGCCATGGAGCCAGGCACAGCTCCGCCGTCCACCGCCGTCACCCTTCTTGGAAAGTACCGTTTGGGCCGCCTTCTCGGCCGCGGCAGCTTCGCCAAAGTCTACCAAGCAATTTCATTAACCGACAACGCCACCGTCGCCATCAAAATCATCGACAAAGCCAAAACCAAAACCTTCGGCGCCGCCCTGGAGCGCTGCATAGTCCGGGAGGTCGCCGCCATGCGCCGCCTCGACCACCACCCAAACATCCTCAAAATCCACGAAGTCATGGCGACGAAATCCAAGATCTACCTGGTGGTCGAATTCGCAGCCGGCGGCGAACTCCTCGCGAAAATCTCCCGCCGGAGACGGTTCGCCGAACCGGCCTCGCGCCGGCTCTTCCAACAGCTCGTCTCGGCGCTCAACTTCTGCCACGAAAACGGCGTCGTTCACCGCGATCTGAAGCCGCAGAATCTGTTACTAGACGAACAGGGGAATTTGAAAATCTCCGACTTCGGGCTCTCTGCTTTACCCGAACAGCTCAGAGACGGGTTGCTCCACACCGCCTGCGGAACTCCGGCGTACTCCGCGCCGGAAGTCATGCTCCAGCGCGGCGGCGGCGGATACGACGGCGCCAAGGCGGAGGCGTGGTCATGTGGGGTAATTTTATTCGTATTGCTTTCCGGATCCCTCCCTTTCGACGACGGTAACCTCGTGGCGATGTACAAGAAAATCCACCGGCGGGATTTTCAATTCCCAAATTGGATTTCGAAACCGGCCCGATTCGTAATCTACCACCTCCTGGATCCGAATCCGGAGACGAGGATGAGCATCGAGGGGATTATGCAAAACCCCTGGTTCAAGAAATCGCTGCGATTGAAACAGAGCAACGGAAATTGCGAGAGCGTGTTGCAATCGATTAATGATTACAGAGTTGGGGAAACGAACGCGTTCGATTTGATTTCGATGTCGTCGGGGTTGGACTTGTCGGGGATGTTCGAGGCGGCGGAGCAGAGGGCGGAGAGGAGGTTTACGGCGAGGGTGGGGATGAAGGAGGTGGAGGAGAGGGTGAGGGAGATCGGAGAGGAGCTGGGGTATGCGGTGGCGGCGAAGGGAGCGGCGATCGGAATGGGGAAGGGGAGGGTGGTTGTGGTGGTGGAGGTGGTGGAGGTGGCGGCGGCGGCGGCGGCGATGGTGGAGGTGAGAGTGGTGAAAGGAGGGGCGGAGTTTGGAGAGCTCCATTGGGGGTGTTTCGAGAAGAAGCTTGAAGGTATTGCTGTTCCATGGCAGACGAAATGCAATCTGTGA 1446 56.29 MIVICQSRQGYFGKSVATNWKFEQWVTASSMQPMGIHYKNLNASAFVTRPLNSTAMEPGTAPPSTAVTLLGKYRLGRLLGRGSFAKVYQAISLTDNATVAIKIIDKAKTKTFGAALERCIVREVAAMRRLDHHPNILKIHEVMATKSKIYLVVEFAAGGELLAKISRRRRFAEPASRRLFQQLVSALNFCHENGVVHRDLKPQNLLLDEQGNLKISDFGLSALPEQLRDGLLHTACGTPAYSAPEVMLQRGGGGYDGAKAEAWSCGVILFVLLSGSLPFDDGNLVAMYKKIHRRDFQFPNWISKPARFVIYHLLDPNPETRMSIEGIMQNPWFKKSLRLKQSNGNCESVLQSINDYRVGETNAFDLISMSSGLDLSGMFEAAEQRAERRFTARVGMKEVEERVREIGEELGYAVAAKGAAIGMGKGRVVVVVEVVEVAAAAAAMVEVRVVKGGAEFGELHWGCFEKKLEGIAVPWQTKCNL 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3592707 3594369 - MC05g_new0055 Mch5g0540 687959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0540 481 CDD CIPK_C 362 419 - -
Mch5g0540 481 Gene3D Transferase(Phosphotransferase) domain 1 158 358 - -
Mch5g0540 481 ProSiteProfiles Protein kinase domain profile. 73 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0540 481 FunFam Aurora kinase A 66 159 - -
Mch5g0540 481 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0540 481 Gene3D Kinase associated domain 1, KA1 359 473 - -
Mch5g0540 481 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 68 448 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch5g0540 481 Gene3D Phosphorylase Kinase; domain 1 62 157 - -
Mch5g0540 481 SMART serkin_6 73 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0540 481 SUPERFAMILY Protein kinase-like (PK-like) 70 345 IPR011009 -
Mch5g0540 481 Pfam NAF domain 362 414 IPR004041 GO:0007165(InterPro)
Mch5g0540 481 Pfam Protein kinase domain 73 333 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0540 481 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524(InterPro)
Mch5g0540 481 FunFam Non-specific serine/threonine protein kinase 64 356 - -
Mch5g0540 481 ProSiteProfiles NAF domain profile. 356 380 IPR018451 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0540 Mch-Chr5:3592707 Mch6g0631 Mch-Chr6:4301878 2.27E-104 dispersed
Mch9g1833 Mch-Chr9:20125759 Mch5g0540 Mch-Chr5:3592707 5.91E-39 dispersed
Mch5g0540 Mch-Chr5:3592707 Mch7g1020 Mch-Chr7:14380900 1.36E-179 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77399 PF00069 Pkinase 2.60E-65 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0540 K12761 - csv:101217555 598.586