Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0550 ATGCCCGTACGGCAAATGAAAGAGAGCTCGGAGCAGCACCTTGTAATCAAAACCCACTTTCAGAACGCTGTTCAGAAAGCCCCAAAATCAACCCAAAATGGGAAAGGCCCGCCGAATCTGGAGCCGCCCCAGAACATCAAATCCCGGAACCCAACTTCCCCTCCGAGCAAAAACAGGGGCCGGAGGAGGAGCAGAGGCGGCCGGAAATCCGATCAGGGAGAAGTCTGCTTGAGGCCCAGTTCTCGGCCCTGCACGGTGGCGCGTAAGCCCGACGGACCGGAGATGACCGCCGGAGCCCTGGTGACGAAAACCACTCCCAATGGTGTAAACGCTTGTGGGATGGCAATGGGGTTTCGGAATTCAAGCAAATCTTTGAGCTTTGCCCCGAGGCCTGGGTTCGGGCAAGTCGGGACAAGGTGTATTGTGAAAGCAAACCATTTCTTCGCAGAGTTACCAGACAAAGATTTGAATCAATATGATGTTACAATTACCCCTGAAGTGGCATCAAGAACTGTGAACAGAGCCATCGTGGGTGAATTGGTGAGATTATACAGAGAATCTGATCTGGGAAAAAGATTACCAGCTTATGATGGCAGAAAGAGTCTGTATACAGCTGGTGAACTTCCCTTTGTTTGGAAAGAGTTTAACATCAAGCTTGTGGATGAAGAAGATGGAGTCAGTGGTCCCAAGAGGGAGAGGGAATATAAAGTGGTCATTAAGTTTGTTGCACGGGCAAATTTACACCATTTGGGTCAGTTTCTTGCGGGTAAGCGCGCCGATGCTCCACAAGAAGCTCTTCAAATATTAGACATTGTATTAAGAGAGCTGTCATCCAAAAGGTACTGCCAAATAGGGAGATCCTTCTTTTCTCCTGATATTAGATCACCACAACGGCTTGGCGATGGGTTAGAATCATGGTGTGGTTTTTACCAGAGTATAAGGCCTACTCAGATGGGACTTTCTTTGAACATTGATATGGCTTCAGCTGCATTTATTGAGCCTCTCCCTGTCCTTGAGTTTGTAGCTCAGCTTCTAGGCAAAGATGTTTTATCGCGGCCATTGTCTGATTCCGATAGAGTAAAGATAAAAAAGGCTCTTAGAGGTGTGAAAGTTGAAGTAACTCACCGGGGTAATGTAAGGCGGAAGTATCGAGTTTCGGGTCTGACATCACAACCTACAAGAGAACTAGTATTTCCTGTTGATGACAACTCAACCATGAAGTCAGTTGTTGAATACTTCCAGGAGATGTATGGTTTCACAATTCAACATGCACATCTTCCTTGCCTTCAAGTAGGAAATCAGAAGAAGGCAAATTATTTACCAATGGAGGCCTGCAAAATTGTAGAGGGGCAAAGATATACGAAAAGATTGAATGAGAAGCAAATAACTGCACTTTTAAAAGTCACGTGTCAAAGACCTAGGGATCGAGAAAATGACATTTTGCAGACTGTTCAACATAATGCCTATGACAATGATCCTTATGCAAAGGAGTTTGGGATTAAAATCAGTGAGAAGCTGGCTTCTGTTGAAGCTAGAATTCTTCCTCCTCCATGGCTGAAATATCATGATACTGGCAAAGAGAAGGATTGCTTGCCTCAAGTGGGTCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGTATCAACTTCTCTCGGAGTGTGCAAGAGAGCGTCGCTCGTGGGTTTTGTTCCGAACTTGCTCAAATGTGTCAAGTGTCTGGAATGGAATTTAATCCAGAACCGGTTATTCCAATATACAATTCAAGGCCAGAACAGGTAGAGAAAGCTCTGAAGCATGTTTATCATGCTTCCACGAACAAAACAAAAGGAAAAGAGTTAGAGCTACTGTTAGCTATTTTACCAGACAACAACGGATCTCTTTACGGTGATCTTAAACGAATATGTGAAACCGATCTCGGTCTAATATCACAATGCTGTCTTACAAAACACGTGTTCAAGATTAGCAAGCAGTACCTTGCTAATGTGTCCCTGAAGATCAATGTCAAGATGGGTGGTAGAAACACTGTCCTTCTAGATGCTATCAGCTGCAGGATACCGCTCGTGAGTGACATACCAACGATTATATTTGGAGCAGATGTGACCCATCCCGAGAATGGCGAAGATTCCAGCCCTTCAATAGCTGCTGTCGTAGCCTCTCAGGATTGGCCTGAAGTGACAAAATATGCTGGACTAGTATGTGCTCAGGCTCATAGACAGGAACTTATACAAGACTTGTATAAAACTTGGCAGGATCCTGTTCGTGGCACGGTTAGTGGTGGCATGATCAGGGATCTTCTGGTTTCTTTTAGGAAGGCAACAGGGCAGAAGCCATTAAGAATAATATTTTACAGGGATGGCGTGAGCGAAGGACAGTTTTATCAAGTATTACTTTATGAGTTGGATGCAATCAGGAAGGCGTGCGCTTCTCTTGAACCGAATTACCAACCTCCTGTAACGTTTATCGTCGTACAAAAACGACACCACACCCGATTGTTCGCCAACAACTATAGAGACAGGAGTAGCACAGACAAGAGTGGGAACATTTTGCCTGGCACCGTAGTCGACTCGAAAATATGCCATCCAACTGAATTTGACTTTTACCTCTGTAGCCATGCTGGAATTCAGGGTACAAGTCGGCCAGCACATTACCATGTTCTTTGGGATGAAAACAATTTCACTGCAGACGGAATTCAGTCGTTAACAAACAACCTTTGCTACACATATGCAAGGTGTACGCGTTCGGTTTCTGTCGTCCCTCCAGCATATTATGCACATTTAGCAGCATTCCGAGCTCGATTCTACATGGAACCAGAGATGCAAGAGAATGGGTCAGCTGGTCGTTCTGCCAAGAGCACACGAGCTACAGGGGAGACTGGGGTTCGTCCTTTGCCAGCTCTAAAGGAAAACGTGAAGAGAGTAATGTTTTACTGTTAG 2958 45.13 MPVRQMKESSEQHLVIKTHFQNAVQKAPKSTQNGKGPPNLEPPQNIKSRNPTSPPSKNRGRRRSRGGRKSDQGEVCLRPSSRPCTVARKPDGPEMTAGALVTKTTPNGVNACGMAMGFRNSSKSLSFAPRPGFGQVGTRCIVKANHFFAELPDKDLNQYDVTITPEVASRTVNRAIVGELVRLYRESDLGKRLPAYDGRKSLYTAGELPFVWKEFNIKLVDEEDGVSGPKREREYKVVIKFVARANLHHLGQFLAGKRADAPQEALQILDIVLRELSSKRYCQIGRSFFSPDIRSPQRLGDGLESWCGFYQSIRPTQMGLSLNIDMASAAFIEPLPVLEFVAQLLGKDVLSRPLSDSDRVKIKKALRGVKVEVTHRGNVRRKYRVSGLTSQPTRELVFPVDDNSTMKSVVEYFQEMYGFTIQHAHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILQTVQHNAYDNDPYAKEFGIKISEKLASVEARILPPPWLKYHDTGKEKDCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQESVARGFCSELAQMCQVSGMEFNPEPVIPIYNSRPEQVEKALKHVYHASTNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKISKQYLANVSLKINVKMGGRNTVLLDAISCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWQDPVRGTVSGGMIRDLLVSFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNYRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPEMQENGSAGRSAKSTRATGETGVRPLPALKENVKRVMFYC 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3690938 3699060 + MC05g0494 Mch5g0550 687969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0550 985 Gene3D - 692 985 IPR036397 GO:0003676(InterPro)
Mch5g0550 985 FunFam Argonaute 10 513 686 - -
Mch5g0550 985 Pfam N-terminal domain of argonaute 139 273 IPR032474 -
Mch5g0550 985 SMART DUF1785_2 282 334 IPR014811 -
Mch5g0550 985 CDD Piwi_ago-like 493 943 IPR045246 -
Mch5g0550 985 FunFam protein argonaute 10-like 692 985 - -
Mch5g0550 985 SMART PAZ_2_a_3 339 471 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch5g0550 985 MobiDBLite consensus disorder prediction 20 96 - -
Mch5g0550 985 SMART Piwi_a_2 623 944 IPR003165 GO:0003676(InterPro)
Mch5g0550 985 Pfam Argonaute linker 2 domain 475 521 IPR032472 -
Mch5g0550 985 Gene3D - 513 686 - -
Mch5g0550 985 MobiDBLite consensus disorder prediction 20 55 - -
Mch5g0550 985 ProSiteProfiles PAZ domain profile. 336 449 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch5g0550 985 Pfam PAZ domain 361 465 IPR003100 GO:0003723(InterPro)|GO:0005515(InterPro)
Mch5g0550 985 Pfam Mid domain of argonaute 532 609 IPR032473 -
Mch5g0550 985 SUPERFAMILY Ribonuclease H-like 614 944 IPR012337 -
Mch5g0550 985 SUPERFAMILY PAZ domain 329 489 IPR036085 GO:0005515(InterPro)
Mch5g0550 985 Gene3D paz domain 328 453 - -
Mch5g0550 985 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 130 971 - GO:0003723(PANTHER)|GO:0004521(PANTHER)|GO:0005737(PANTHER)|GO:0035194(PANTHER)
Mch5g0550 985 ProSiteProfiles Piwi domain profile. 623 944 IPR003165 GO:0003676(InterPro)
Mch5g0550 985 CDD PAZ_argonaute_like 334 448 - -
Mch5g0550 985 Pfam Piwi domain 624 943 IPR003165 GO:0003676(InterPro)
Mch5g0550 985 FunFam Protein argonaute-2 328 454 - -
Mch5g0550 985 Pfam Argonaute linker 1 domain 284 333 IPR014811 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0621 Mch-Chr3:10603779 Mch5g0550 Mch-Chr5:3690938 0 dispersed
Mch3g1774 Mch-Chr3:18979908 Mch5g0550 Mch-Chr5:3690938 0 dispersed
Mch5g0550 Mch-Chr5:3690938 Mch6g0767 Mch-Chr6:5291292 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0550 K11593 - csv:101221352 1904.8