Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0562 ATGGGTAATGCAGATTTTGAGTGCCCACATCGTGTGGCCATCCCCCCCACCAAGCCATTTTTCGAGTCCTTAGCTTCCAATCTCAAGGAGACCTTCTTCCCTGATGACCCTTTCAGACAGTTCAAAAACCAGCCTCTTCCAACCCAAATCCTCCTCTGGCTCAAGTACTTCATCCCCATTCTCGAATGGGCTCCTCACTACTCCCTCGACTTCTTCAAATCCGACCTTGTCTCCGGTATCACCATCGCCAGCCTCGCCGTCCCTCAGGGCATCAGCTATGCCAATCTGGCCAGCATCCCACCCATTATAGGACTTTATTCGAGCTTCGTGCCGCCGTTGATATACGCGATGCTGGGAAGTTCGAGAGATGTGGCGGTGGGGACGGTGGCGGTGGCGTCGCTGCTCATGGCGGCCATGATGGGGAAGGAAGTCAGCCCGGTGGAGCATCCGAAGCAATACGTTCAACTCGTCTTCACGGCAACTTTCTTCGCTGGAGTTTTCCAAGCCTCTCTCGGCTTTCTCAGACTGGGGCTGATCGTGGATTTTCTTTCTCATGCAACGATAGTGGGGTTCATGGGGGGAGCGGCCACTGTTGTTTGTCTTCAGCAGCTCAAAGGCCTCATGGGATTGGTCCATTTTACACATGAGACTGATGTTGTCTCCGTTATGCGTTCTGTCTTCTCTCAAACACACCAGTGGAGATGGGAAAGTGTTGTGTTGGGATGCTGTTTTCTCTTCTTCCTCTTGCTCACCAAATACTTTAGCAAGAAGAAAGCAATCTTCTTTTGGATAAACGCATTGGCGCCTTTGACTTCGGTAATCTTGGGAAGTCTCCTCGTTTACTTCACCCACGCTGAAAAACATGGAGTTCAAGTGATTGGGCACTTGAAGAAAGGCTTGAATCCCCCATCTGTATCCGATTTAGTATTTGGGTCTCCTCATCTCCCCATAGCCATTAAAACAGGGATCATCATTGGAATCATAGGCCTCGCTGAAGGGGTGGCTGTGGGAAGAAGTTTTGCTGCGTTTAAGAACTACCACATTGATGGAAACAAGGAGATGATAGCATTTGGGATGATGAACATCGTTGGTTCGTGCACTTCTTGCTACCTGACTGCAGGGCCATTTTCGAGAAGTGCGGTGAATTTCAATGCAGGATGTAAAACTGCAGTCTCGAATATTGTCATGTCAATTGCACTGATGATCACTCTGTTGTTTTTGACGCCATTTTTTCATTACACGCCCCTGGTGGTGCTCTCCGCCATAATCATCACTGCCATGCTTGGCCTAATCAACTATGAAGAAGTCATCCACCTTTGGAAAATCGACAAGTTCGACTTTGTCGTCTGCCTCGGTGCATATATTGGCGTCGTCTTTGGCAGTGTTGAAACGGGCTTGGTCATTGCGATTGCACTCTCTATCTTAAGGCTGCTTCTCATCGTCGCGAGGCCAAGAACTTTAGTATTAGGCAACATTCCCAACTCCACAATTTACAGAAGCATTGATCAATACCCAACAGCTAACCGTGTGCCTGGAATTCTCATCCTTCAAATGGAGGCACCAATCTATTTTGCCAACACAAACTACCTGAGAGAAAGGCTTTCAAGGTGGATTACAGATGAAGAAGAGAGGATAAAATCATCAGGAGAAACCAGCTTGCAGTACATAATTCTAGACATGTCAGGCGTAAGTAGCATTGACTCAAGTGGGATCAGCATGCTTGGAGAGGTTAAGAAGAGTGCTGAAAGAAAGGGTCTCAAACTTGTGCTTGCAAATCCAAGAAGTGAAGTAATCAAAAAGCTGAACAAGTCGAAGTTCATCGAAGCGATCGGGCCGGAATGGATCTATCTGACAGTGGGAGAGGCTGTAACAGCCTGCAACTTCATGCTCCACTCCTGGAAACCAAATCCTGTTGCTGCAGAATTAGATTCACCAGTGAACAATGTCTAG 1950 47.79 MGNADFECPHRVAIPPTKPFFESLASNLKETFFPDDPFRQFKNQPLPTQILLWLKYFIPILEWAPHYSLDFFKSDLVSGITIASLAVPQGISYANLASIPPIIGLYSSFVPPLIYAMLGSSRDVAVGTVAVASLLMAAMMGKEVSPVEHPKQYVQLVFTATFFAGVFQASLGFLRLGLIVDFLSHATIVGFMGGAATVVCLQQLKGLMGLVHFTHETDVVSVMRSVFSQTHQWRWESVVLGCCFLFFLLLTKYFSKKKAIFFWINALAPLTSVILGSLLVYFTHAEKHGVQVIGHLKKGLNPPSVSDLVFGSPHLPIAIKTGIIIGIIGLAEGVAVGRSFAAFKNYHIDGNKEMIAFGMMNIVGSCTSCYLTAGPFSRSAVNFNAGCKTAVSNIVMSIALMITLLFLTPFFHYTPLVVLSAIIITAMLGLINYEEVIHLWKIDKFDFVVCLGAYIGVVFGSVETGLVIAIALSILRLLLIVARPRTLVLGNIPNSTIYRSIDQYPTANRVPGILILQMEAPIYFANTNYLRERLSRWITDEEERIKSSGETSLQYIILDMSGVSSIDSSGISMLGEVKKSAERKGLKLVLANPRSEVIKKLNKSKFIEAIGPEWIYLTVGEAVTACNFMLHSWKPNPVAAELDSPVNNV 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3798306 3803688 + MC05g0506 Mch5g0562 687981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0562 649 FunFam Sulfate transporter 31 483 629 - -
Mch5g0562 649 CDD STAS_SulP_like_sulfate_transporter 504 619 - -
Mch5g0562 649 PANTHER SULFATE TRANSPORTER 47 626 IPR001902 GO:0005887(PANTHER)|GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0562 649 NCBIfam sulfate permease 59 622 IPR001902 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch5g0562 649 Gene3D STAS domain 483 628 IPR036513 -
Mch5g0562 649 ProSitePatterns SLC26A transporters signature. 101 122 IPR018045 GO:0008271(InterPro)|GO:0008272(InterPro)
Mch5g0562 649 Pfam STAS domain 504 622 IPR002645 -
Mch5g0562 649 Pfam Sulfate permease family 72 451 IPR011547 GO:0016020(InterPro)
Mch5g0562 649 ProSiteProfiles STAS domain profile. 503 626 IPR002645 -
Mch5g0562 649 SUPERFAMILY SpoIIaa-like 506 626 IPR036513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0562 Mch-Chr5:3798306 Mch9g1209 Mch-Chr9:13275016 2.39E-245 dispersed
Mch5g0562 Mch-Chr5:3798306 Mch6g0790 Mch-Chr6:5494502 1.61E-248 wgd
Mch5g0562 Mch-Chr5:3798306 Mch9g0897 Mch-Chr9:6980842 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0562 K17471 - csv:101203205 1127.08