Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0563 ATGCCATTAACCTTCTTCTCCAAGATGAAAACCTCAAACTCCCCTCTCCCAAAATGGCTCCTCCTCCTCTCCATCATTTCCCTCCTCCCCAAACCTTCCGATCAACAGCCCTCTGCGTCCCCGTCGCCATCCCCATTGCCACCGTCGCCGTTTCTCCCGAACCCGAGACTCCTCAAAGCCTACTCCGCTCTCCAAGCTTGGAAACGCGCCATGACCACCGACCCCGCCAACTTCACCGCCGACTGGTACGGCCCCGACGTCTGCAACTATTCCGGCGTCTACTGCGCCCCCGCCCCCGATGACCCCCACATCCTCACCGTCGCTGGAATCGACCTCAACCACGCGAACATCTCCGGCACCCTGCCGGAGGACCTCGGCCTCCTGACCGACCTTGCTCTGTTCCACATCAACTCCAATCGTTTCTGCGGCAGCCTTCCGGATTCCTTCCGGTGCCTCTCCCTCCTCTTCGAGCTCGATATCAGTAACAATGACTTCTCCGGCGATTTCCCCGCCGTCGTTCTCTCCCTCCCTTCCCTCAAATTTCTCGATATCCGCTACAACAGATTCCACGGCGATGTCCCTTCTCCCCTGTTTCAGAAGAAACTCGATGCTCTGTTCATCAATAACAACGATTTCAAATTCTCCCTCCCTGAAAACATCGGCGATTCCCCTGTTTCTGTTCTGGTTTTTGCTAACAATAACATCAATGGCTGCCTCCCCTCCAGTATAGCCAAAATGAAGGACACCCTCAATGAGATTATAATTACCAATAGTGGGTTAATTGGGTGTTTGCCGCCGGAAATTGGGTTGCTGAAAAATCTCACCGTCTTCGATGTCAGTGGTAACAATCTCGTCGGGCCGTTGCCGGAGACGATGGCCGGGATGAAGAATTTGGAGCAGCTGAATGTTGCGGACAACCAATTGTCCGGCGACATTCCGGCGAGTATCTGCTCGTTGCCCAAATTGCAGAATTTCACTTTCTCGGATAATTTCTTCTGCAGCGAGTCGCCGGCGTGCCAGAAACTTCAGGCGAGAGATGATCGGAAAAATTGTATACCGGACCGGCCACTGCAACGCTCGCCGGAGGAGTGCGTCGCTTTCTACTCTCACCCTGTTGACTGCGGCGTCTTTGGCTGCACTCGCCGGCCGCCGCCTCCGGCACCGTCTCCTTATTATCAGTATCCGTAA 1188 54.8 MPLTFFSKMKTSNSPLPKWLLLLSIISLLPKPSDQQPSASPSPSPLPPSPFLPNPRLLKAYSALQAWKRAMTTDPANFTADWYGPDVCNYSGVYCAPAPDDPHILTVAGIDLNHANISGTLPEDLGLLTDLALFHINSNRFCGSLPDSFRCLSLLFELDISNNDFSGDFPAVVLSLPSLKFLDIRYNRFHGDVPSPLFQKKLDALFINNNDFKFSLPENIGDSPVSVLVFANNNINGCLPSSIAKMKDTLNEIIITNSGLIGCLPPEIGLLKNLTVFDVSGNNLVGPLPETMAGMKNLEQLNVADNQLSGDIPASICSLPKLQNFTFSDNFFCSESPACQKLQARDDRKNCIPDRPLQRSPEECVAFYSHPVDCGVFGCTRRPPPPAPSPYYQYP 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3807556 3809657 + MC05g_new0057 Mch5g0563 687982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0563 395 Pfam Leucine Rich Repeat 178 197 IPR001611 GO:0005515(InterPro)
Mch5g0563 395 Pfam Leucine rich repeat 273 330 IPR001611 GO:0005515(InterPro)
Mch5g0563 395 FunFam Leucine-rich repeat extensin-like protein 1 61 222 - -
Mch5g0563 395 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 46 387 IPR051582 -
Mch5g0563 395 Gene3D Ribonuclease Inhibitor 59 353 IPR032675 -
Mch5g0563 395 SUPERFAMILY L domain-like 62 342 - -
Mch5g0563 395 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 247 335 - -
Mch5g0563 395 Pfam Leucine rich repeat N-terminal domain 62 95 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0563 Mch-Chr5:3807556 Mch8g3134 Mch-Chr8:33665246 2.57E-40 dispersed
Mch4g0146 Mch-Chr4:976904 Mch5g0563 Mch-Chr5:3807556 3.36E-43 transposed
Mch5g0563 Mch-Chr5:3807556 Mch6g0789 Mch-Chr6:5485973 2.23E-49 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0563 - - - 0.0