Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0567 ATGGATTCTAAAGGAAGAGACGATATTGGAGGTATTAAGACCCCAAAGGAGACAGAGAGTGAGGATAGAACTCTGAATTCAAAGGTGGCTGGTATGGGAAGCATTAGCAGCAAAGACATGATATTCAGAGCAGATAAGATTGATTTGAAAAACCTAGATATGCAGCTGGAAAAGCACTTGAGCCGGGTTTGGTCAAGGAACGTTGAAAACCAAAAGCCTAAGGAGGAGTGGGAGATTGATTTGTCTAAACTTGATATCCGATATGTTGTTGCTCATGGGACTTACGGAACAGTATTCAGGGGTGCTTATGACAATCAAGATGTCGCAGTGAAGCTATTGGACTGGGGGGAGGATGGTCTTGCCACAACTGCAGAAACTGCTGCTCTGCGGGCATCATTTCGGCAAGAGGTTGCTGTTTGGCACAAGCTTGACCATCCTAATGTTACAAAATTTGTTGGAGCTTCAATGGGAGCTACAAATCTTAAGATTCCTTCAAAAGGTTCTTCAATGGATGGTCAAAATTCGCTACCCGCAAGGGCCTGCTGTGTTGTTGTCGAGTATCTTGCTGGTGGGACATTAAAACAATACTTGATAAGGAACAGAAGAAAGAAACTTGCCTTTAAGGCTGTGATTCAAATAGCTTTGGATCTCTCTAGAGGGCTTAGTTATCTACACTCTAAGAAGATTGTACACCGTGATGTCAAAACCGAAAACATGTTGCTAGATGTTCACAGAACTCTTAAAATTGCTGATTTTGGTGTTGCCCGTGTTGAAGCTCAGAATCCAAGAGACATGACTGGGGAAACTGGTACCCTTGGATACATGGCCCCAGAGGTTCTTGATGGGAAGCCGTACAATAGAAGATGTGATGTCTATAGCTTTGGAATCTGCTTATGGGAAATTTACTGCTGCGATATGCCTTATCCTGATCTTAGTTTCGCAGATGTGTCATCTGCTGTTGTTCGACAGAATCTGCGACCCGAGATTCCGAAATGCTGTCCAAGTTCTCTGGCAAATGTGATGAGGAAATGCTGGGATGGAAATCCAGCCAAACGCCCTGAAATGGATGAGGTTGTCAAACTGTTGGAAGCCATTGATACAAGCAAAGGAGGGGGGATGGTTCCTGATGACCAAGCTGCTGGCTGCTTCTGTTTCGGCCCACCACGCGGTCCTTAA 1176 44.64 MDSKGRDDIGGIKTPKETESEDRTLNSKVAGMGSISSKDMIFRADKIDLKNLDMQLEKHLSRVWSRNVENQKPKEEWEIDLSKLDIRYVVAHGTYGTVFRGAYDNQDVAVKLLDWGEDGLATTAETAALRASFRQEVAVWHKLDHPNVTKFVGASMGATNLKIPSKGSSMDGQNSLPARACCVVVEYLAGGTLKQYLIRNRRKKLAFKAVIQIALDLSRGLSYLHSKKIVHRDVKTENMLLDVHRTLKIADFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGICLWEIYCCDMPYPDLSFADVSSAVVRQNLRPEIPKCCPSSLANVMRKCWDGNPAKRPEMDEVVKLLEAIDTSKGGGMVPDDQAAGCFCFGPPRGP 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 3851478 3856174 + MC05g0509 Mch5g0567 687986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0567 391 MobiDBLite consensus disorder prediction 1 24 - -
Mch5g0567 391 Gene3D Transferase(Phosphotransferase) domain 1 190 373 - -
Mch5g0567 391 PRINTS Tyrosine kinase catalytic domain signature 185 198 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 PRINTS Tyrosine kinase catalytic domain signature 223 241 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 PRINTS Tyrosine kinase catalytic domain signature 289 311 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 PRINTS Tyrosine kinase catalytic domain signature 333 355 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 SUPERFAMILY Protein kinase-like (PK-like) 64 362 IPR011009 -
Mch5g0567 391 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 51 363 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Mch5g0567 391 SMART serkin_6 84 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 FunFam Kinase suppressor of Ras 1 73 167 - -
Mch5g0567 391 Pfam Protein tyrosine and serine/threonine kinase 88 361 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 FunFam Serine/threonine-protein kinase HT1 188 373 - -
Mch5g0567 391 CDD STKc_MAP3K-like 90 362 - -
Mch5g0567 391 ProSiteProfiles Protein kinase domain profile. 84 365 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0567 391 MobiDBLite consensus disorder prediction 1 25 - -
Mch5g0567 391 Gene3D Phosphorylase Kinase; domain 1 73 165 - -
Mch5g0567 391 ProSitePatterns Serine/Threonine protein kinases active-site signature. 229 241 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0567 Mch-Chr5:3851478 Mch8g1517 Mch-Chr8:11697831 1.03E-189 dispersed
Mch5g0567 Mch-Chr5:3851478 Mch9g0894 Mch-Chr9:6914541 3.09E-227 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77401 PF07714 PK_Tyr_Ser-Thr 7.60E-59 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0567 - - - 0.0