Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0635 ATGGGTATTTCATGGAGTAACAGAAGAAGAAACAATTACCTTCAAAACCCTGCTCCGCCTCCGCCGTACCTCTCTTCTTCCTCTTTCTATTACCCTTCTGAACCTCCGTCTCTTTCTCCGCCGCCGCCGCCGCACAGCAACCCTTACGCTCCAACTCCGCAGCCGCTACCTCTGCAACCCCCTCCTCCTCCGCCTCCCCCTGCTCCTCACTCCTACTACTTTTCTGGTGGGTATAATTCGTGTAATTATGCGGCTTCTACCATGGGGCGGTTCAATTTTCATCCTTATTATGCCAATCAGAGTAATGGGTGGTCCCAAATTCGGCCGGCCATGGGTCCGCCGTTGCTTCCGCCCCCGCCCCTGCCGTTTGTGGAGCACCGGCAGGCGAAGAAGGTTAGAAATGATGTGAATGTGCATAAGGATACTCTGCGGATTGAGGTGGATGAGCAGAACCCCGATCGTCACTTGGTTTCCTTCGTTTTCGACGCGTTGTATGACGGAAGCATAACCATTCTATTTTTTGCCAAGGAAGAGCTCAACTGTAGGTTTGTTCCAGTATATCCCGAAGCCTTTAAGCCGGTGAGAATCCCATTTCAGAAAGGTCCTGCTCAGAAGTTCTTTCAGCCTGTGGGTACAGGCTTTGACTTGGGATTTTTTGAGTTGGACGACCTCTCAAAACCCTCACCTGCAGAGGACATTTTTCCTCTAGTTATTTCAGCTGAGACTTGCTCACCCTCCCAGTCCAATGATGAGCGTATTGGCGAGCCTCAACCAGATAATTCACATATGCAAATTACTCAAGCTGTTCTGGAGAAGAAAAATGGTGGTCCTTTCCAAGTTAGAGTGATTAGGCAGCTTCTTTGGATTGATGGAGTGCGATATGAATTACGAGAGATATTTGGAATAGGTAGTTCATCAGCAGAAGGCTTTGACGACAACGACACCGGGAAGGAGTGTGTGATTTGCATGACTGAACCCAAGGATACCGCCGTATTACCATGCCGACATATGTGCATGTGCAGTGAGTGTGCCAAGGAACTGAGGCTTCAATCCAATAAATGTCCTATTTGCCGTCAACCAATTGAAGAACTTATAGAAATCAAGATAAATAATAGCGACCAGTGA 1125 48.36 MGISWSNRRRNNYLQNPAPPPPYLSSSSFYYPSEPPSLSPPPPPHSNPYAPTPQPLPLQPPPPPPPPAPHSYYFSGGYNSCNYAASTMGRFNFHPYYANQSNGWSQIRPAMGPPLLPPPPLPFVEHRQAKKVRNDVNVHKDTLRIEVDEQNPDRHLVSFVFDALYDGSITILFFAKEELNCRFVPVYPEAFKPVRIPFQKGPAQKFFQPVGTGFDLGFFELDDLSKPSPAEDIFPLVISAETCSPSQSNDERIGEPQPDNSHMQITQAVLEKKNGGPFQVRVIRQLLWIDGVRYELREIFGIGSSSAEGFDDNDTGKECVICMTEPKDTAVLPCRHMCMCSECAKELRLQSNKCPICRQPIEELIEIKINNSDQ 374
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4239596 4244513 - MC05g0557 Mch5g0635 688054
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0635 374 CDD mRING-HC-C3HC5_MGRN1-like 317 358 IPR045195 -
Mch5g0635 374 MobiDBLite consensus disorder prediction 1 69 - -
Mch5g0635 374 SUPERFAMILY RING/U-box 318 364 - -
Mch5g0635 374 FunFam probable E3 ubiquitin-protein ligase LOG2 303 368 - -
Mch5g0635 374 PANTHER MAHOGUNIN 1 372 IPR045194 GO:0016567(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)
Mch5g0635 374 Pfam Zinc finger, C3HC4 type (RING finger) 317 363 - -
Mch5g0635 374 ProSiteProfiles Zinc finger RING-type profile. 319 358 IPR001841 -
Mch5g0635 374 MobiDBLite consensus disorder prediction 34 69 - -
Mch5g0635 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 368 IPR013083 -
Mch5g0635 374 SMART ring_2 319 357 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0635 Mch-Chr5:4239596 Mch5g1754 Mch-Chr5:18134190 1.12E-91 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0635 K27504 - csv:101203938 625.55