Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0669 | ATGTCTTTGAAGAGTTTAATTCAGGAAATGAGATCCAGGTCCCGCCGGGTGGTGCAGGACGGATCGGCGGCTGAAGTAGGCGACGGTTTGGCGCAGAGCTGCTGGGCGTACATGCCTCAGGAGTTACTGAGGGAGGTGCTGATTAGAATCGAGAGCTCCGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCGTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCGGAAGTTTCTGGCAGATTGACGTTTCCTATATCCGTCAAGCAGCCTGGCTCAAGGGATTCGCTTGTTCACTGCTTCATAAAACGGAATCGGTCCGCACAAAGTTATTGCCTTTTCCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCACGCAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGGAAGTGGCACCTTTGTTGGGAAATTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGCTTGTGGGTCTCAAACAAGTGTCACCTAGAGTTCCGGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGACCAAGGAGAATGCATTGTGTCATGGATGCTATTCCTTCATCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCCCAAGCCGTATCGACTTTCTTCCATCAACGAGATTTTCCCGTTCAAAAACGAATCACACGGATGATCTTCAATCATCAGGATCTTCAACCAATCAAAAAGATGGAGTTTTGGTTCTTAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACGATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCCGAAAATGGACATGCCGGACCTGAACATGAGAAGATCATCCTTCAATTCGGAAAAGTGGGAAAGGATGTATTCACAATGGACTACAGATATCCAATCTCAGCATTTCAAGCTTTTGCCATCTGCCTCAGCAGCTTTGACACAAAGATTGCTTGTGAATGA | 1167 | 47.64 | MSLKSLIQEMRSRSRRVVQDGSAAEVGDGLAQSCWAYMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGSRDSLVHCFIKRNRSAQSYCLFLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKGSGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPSSAIEPGGVAPIQTEFSPSRIDFLPSTRFSRSKTNHTDDLQSSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGHAGPEHEKIILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE | 388 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 4512248 | 4520697 | + | MC05g0588 | Mch5g0669 | 688088 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0669 | 388 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Mch5g0669 | 388 | Gene3D | - | 29 | 82 | - | - | |
Mch5g0669 | 388 | Gene3D | Tubby Protein; Chain A | 92 | 388 | IPR025659 | - | |
Mch5g0669 | 388 | Pfam | Tub family | 96 | 383 | IPR000007 | - | |
Mch5g0669 | 388 | SUPERFAMILY | F-box domain | 29 | 78 | IPR036047 | GO:0005515(InterPro) | |
Mch5g0669 | 388 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 388 | IPR025659 | - | |
Mch5g0669 | 388 | MobiDBLite | consensus disorder prediction | 272 | 292 | - | - | |
Mch5g0669 | 388 | ProSitePatterns | Tub family signature 2. | 373 | 388 | IPR018066 | - | |
Mch5g0669 | 388 | PANTHER | TUBBY-RELATED | 30 | 387 | - | - | |
Mch5g0669 | 388 | FunFam | Tubby-like F-box protein | 92 | 388 | - | - | |
Mch5g0669 | 388 | ProSitePatterns | Tub family signature 1. | 318 | 331 | IPR018066 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 345 | 364 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 366 | 388 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 300 | 317 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Mch5g0669 | 388 | PRINTS | Tubby superfamily signature | 318 | 334 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1052 | Mch-Chr10:7666224 | Mch5g0669 | Mch-Chr5:4512248 | 5.02E-124 | dispersed | |
Mch9g0482 | Mch-Chr9:3555732 | Mch5g0669 | Mch-Chr5:4512248 | 3.46E-13 | transposed | |
Mch5g0669 | Mch-Chr5:4512248 | Mch7g1139 | Mch-Chr7:15273539 | 2.89E-229 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43357 | PF01167 | Tub | 1.20E-109 | CL0395 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g0669 | K19600 | - | csv:101217713 | 736.873 |