Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0669 ATGTCTTTGAAGAGTTTAATTCAGGAAATGAGATCCAGGTCCCGCCGGGTGGTGCAGGACGGATCGGCGGCTGAAGTAGGCGACGGTTTGGCGCAGAGCTGCTGGGCGTACATGCCTCAGGAGTTACTGAGGGAGGTGCTGATTAGAATCGAGAGCTCCGAGAATGCTTGGCCTCCGCGGAAGAGCGTCGTGGCGTGCGCCGGAGTTTGCCGGAGCTGGAGACGGATTACCAAGGAGATTGTTAAAACTCCGGAAGTTTCTGGCAGATTGACGTTTCCTATATCCGTCAAGCAGCCTGGCTCAAGGGATTCGCTTGTTCACTGCTTCATAAAACGGAATCGGTCCGCACAAAGTTATTGCCTTTTCCTTAGTTTGACTAGTGCACTTGCTGACGATGGAAAGTTTCTTCTTGCTGCACGCAAGTGTCGACGGGCCACCTGCACTGATTATATAATATCTTTGCATGCTGATGACATGTCCAAGGGAAGTGGCACCTTTGTTGGGAAATTAAGATCTAATTTTTTAGGAACCAAGTTCACAATCTTTGATGGACAGCCACCTCATGCAGGAGCCAAGATTTCAAAAAGTCGCTCCTCTAGGCTTGTGGGTCTCAAACAAGTGTCACCTAGAGTTCCGGCCGGCAACTACCCTGTGGCTCACATCTCATATGAGTTAAATGTCTTGGGTTCAAGGGGACCAAGGAGAATGCATTGTGTCATGGATGCTATTCCTTCATCTGCTATTGAACCAGGAGGGGTGGCTCCAATACAGACTGAATTCTCCCCAAGCCGTATCGACTTTCTTCCATCAACGAGATTTTCCCGTTCAAAAACGAATCACACGGATGATCTTCAATCATCAGGATCTTCAACCAATCAAAAAGATGGAGTTTTGGTTCTTAGAAACAAGGCTCCACGGTGGCACGAACAGCTCCAGTGTTGGTGTTTGAACTTCCATGGGCGAGTGACGATTGCTTCAGTGAAAAACTTTCAGTTAGTAGCTTCACCCGAAAATGGACATGCCGGACCTGAACATGAGAAGATCATCCTTCAATTCGGAAAAGTGGGAAAGGATGTATTCACAATGGACTACAGATATCCAATCTCAGCATTTCAAGCTTTTGCCATCTGCCTCAGCAGCTTTGACACAAAGATTGCTTGTGAATGA 1167 47.64 MSLKSLIQEMRSRSRRVVQDGSAAEVGDGLAQSCWAYMPQELLREVLIRIESSENAWPPRKSVVACAGVCRSWRRITKEIVKTPEVSGRLTFPISVKQPGSRDSLVHCFIKRNRSAQSYCLFLSLTSALADDGKFLLAARKCRRATCTDYIISLHADDMSKGSGTFVGKLRSNFLGTKFTIFDGQPPHAGAKISKSRSSRLVGLKQVSPRVPAGNYPVAHISYELNVLGSRGPRRMHCVMDAIPSSAIEPGGVAPIQTEFSPSRIDFLPSTRFSRSKTNHTDDLQSSGSSTNQKDGVLVLRNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGHAGPEHEKIILQFGKVGKDVFTMDYRYPISAFQAFAICLSSFDTKIACE 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4512248 4520697 + MC05g0588 Mch5g0669 688088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0669 388 CDD F-box_AtTLP-like 35 79 - -
Mch5g0669 388 Gene3D - 29 82 - -
Mch5g0669 388 Gene3D Tubby Protein; Chain A 92 388 IPR025659 -
Mch5g0669 388 Pfam Tub family 96 383 IPR000007 -
Mch5g0669 388 SUPERFAMILY F-box domain 29 78 IPR036047 GO:0005515(InterPro)
Mch5g0669 388 SUPERFAMILY Tubby C-terminal domain-like 84 388 IPR025659 -
Mch5g0669 388 MobiDBLite consensus disorder prediction 272 292 - -
Mch5g0669 388 ProSitePatterns Tub family signature 2. 373 388 IPR018066 -
Mch5g0669 388 PANTHER TUBBY-RELATED 30 387 - -
Mch5g0669 388 FunFam Tubby-like F-box protein 92 388 - -
Mch5g0669 388 ProSitePatterns Tub family signature 1. 318 331 IPR018066 -
Mch5g0669 388 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 345 364 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 366 388 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 300 317 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Mch5g0669 388 PRINTS Tubby superfamily signature 318 334 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1052 Mch-Chr10:7666224 Mch5g0669 Mch-Chr5:4512248 5.02E-124 dispersed
Mch9g0482 Mch-Chr9:3555732 Mch5g0669 Mch-Chr5:4512248 3.46E-13 transposed
Mch5g0669 Mch-Chr5:4512248 Mch7g1139 Mch-Chr7:15273539 2.89E-229 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43357 PF01167 Tub 1.20E-109 CL0395 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0669 K19600 - csv:101217713 736.873