Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0670 ATGGGGTGTGTTTTTGGGCGAGAGGTATCTGCGAAGCCCGTCGAGGGAGAGGCGAAGAGGGCGGACGCCGCGGCGGAGGCTGCGGCGGAGGAAATTAGGGCTTCTGCGAAAGCGGAGGCTGGTGAGGCGGCTAATGCTTGCAATGGCGGGGCTAGGAAGGCGGTTGAGGATGAGAATCACAGAGGTTCGAGGCCGAGAGGCGAGCGGCGGCGATCGTCAAGGCCGAATCCGAGATTGAGTAATCCGCCGAAGCATGTGCACGGGGAGCAAGTCGCCGCCGGCTGGCCCTCTTGGCTCTCCGCCGTCGCCGGTGAGGCTATCAATGGATGGATTCCTCGTCGCGCGGACACTTTCGAGAAGCTTGATAAAATTGGGCAGGGGACGTATAGTAATGTGTACAAAGCAAGGGATACATTGACAGGGAAGATTGTGGCTCTAAAGAAGGTTCGTTTTGACAATTTGGAGCCGGAGAGTGTGAGATTTATGGCGCGAGAAATTCTCATTCTGCGGCGTTTGGATCATCCTAATGTTGTAAAGCTAGAAGGTTTGGTGACGTCCCGGATGTCGTGCAGTTTATATCTTGTATTTGAATATATGGAGCATGATTTAGCTGGACTTGCTGCTAGCCCCGGGATCAAGTTTACCGAACCGCAGGTTAAATGTTACATGAACCAATTATTATCAGGGCTTGAACATTGTCACAACCGTCACGTGTTGCATCGTGATATTAAGGGATCAAATCTTCTAATTCGTAATGATGGGATCCTTAAGATAGCCGATTTCGGTTTGGCGTCTGTCTTTGATCCTAACCACAAGCAACCAATGACAAGTAGGGTGGTTACTCTATGGTATAGACCTCCCGAACTTCTTCTTGGAGCTACTGATTATGGTGTTGGTGTGGACCTTTGGAGTGCTGGCTGCATTTTAGCTGAGTTGTTAGCTGGAAGGCCGATCATGCCCGGTCGCACGGAGGTCGAGCAGCTGCATAAGATATTCAAGTTATGTGGCTCTCCTACAGACGAATACTGGAAAAAATCGAAGTTGCCTCATGCAACCATATTCAAGCCTCAGCATTCATACAAGAGATGCATATCAGAGACATTTAAAGACTTTCCGCCATCGTCTCTGCCATTAATCGAGATACTTCTTGCAATCGACCCGGCTGAACGCCTTTCGGCCACTGCTGCTTTACATAGTGAATTTTTCACTACCAAGCCATATGCTTGTGAGCCTTCCAGCCTTCCCAAGTATCCTCCAAGCAAGGAAATGGATGCAAAACTGCGGGATGAAGAAGCAAGAAGGCTAAGAGCTGCTGGCCGAAGCAACGCCGATGGGGTGAAGAAATCACGTGCACGCGATCGAGCTGTGCGGGCAATTCCAGCTCCAGAAGCCAATGCTGAGCTTCAAGCCAATCTCGATAGGCGGCGTCTCATAACTCATGCGAATGCGAAGAGCAAGAGCGAAAAGTTTCCTCCTCCACATCAAGACGGAGCGCTTGGCTACCCTCTGGGATCTTCACACCACGTCGATCCCATCTACGATCCTCCCGACGTTCCATTTAGCACCATGAATTTCTCATATCCAAAAGCAAACATTCAGACATGGTCTGGTCCCTTGATGGACCCAGCTGCTGTTGGTGCTCCAAGAAGGAAAAAACACACTCTAGGTGATGGCCATTCATCAAAATCATCCAAGGACTTGCGGAAGGATAAAAATTCTGCTCGGATATAA 1731 50.09 MGCVFGREVSAKPVEGEAKRADAAAEAAAEEIRASAKAEAGEAANACNGGARKAVEDENHRGSRPRGERRRSSRPNPRLSNPPKHVHGEQVAAGWPSWLSAVAGEAINGWIPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVRFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAASPGIKFTEPQVKCYMNQLLSGLEHCHNRHVLHRDIKGSNLLIRNDGILKIADFGLASVFDPNHKQPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPTDEYWKKSKLPHATIFKPQHSYKRCISETFKDFPPSSLPLIEILLAIDPAERLSATAALHSEFFTTKPYACEPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRARDRAVRAIPAPEANAELQANLDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSHHVDPIYDPPDVPFSTMNFSYPKANIQTWSGPLMDPAAVGAPRRKKHTLGDGHSSKSSKDLRKDKNSARI 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4518006 4522275 - MC05g0589 Mch5g0670 688089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0670 576 ProSiteProfiles Protein kinase domain profile. 118 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0670 576 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524(InterPro)
Mch5g0670 576 MobiDBLite consensus disorder prediction 546 576 - -
Mch5g0670 576 MobiDBLite consensus disorder prediction 53 75 - -
Mch5g0670 576 Gene3D Phosphorylase Kinase; domain 1 105 200 - -
Mch5g0670 576 MobiDBLite consensus disorder prediction 482 503 - -
Mch5g0670 576 FunFam probable serine/threonine-protein kinase At1g54610 201 442 - -
Mch5g0670 576 CDD STKc_CDK9_like 118 402 - -
Mch5g0670 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0670 576 Pfam Protein kinase domain 118 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0670 576 MobiDBLite consensus disorder prediction 538 576 - -
Mch5g0670 576 SUPERFAMILY Protein kinase-like (PK-like) 112 407 IPR011009 -
Mch5g0670 576 Gene3D Transferase(Phosphotransferase) domain 1 201 441 - -
Mch5g0670 576 MobiDBLite consensus disorder prediction 1 90 - -
Mch5g0670 576 PANTHER CELL DIVISION PROTEIN KINASE 117 402 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Mch5g0670 576 FunFam probable serine/threonine-protein kinase At1g54610 105 200 - -
Mch5g0670 576 MobiDBLite consensus disorder prediction 12 37 - -
Mch5g0670 576 SMART serkin_6 118 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g1889 Mch-Chr11:18731472 Mch5g0670 Mch-Chr5:4518006 6.42E-195 dispersed
Mch2g0040 Mch-Chr2:321771 Mch5g0670 Mch-Chr5:4518006 1.57E-112 dispersed
Mch2g0640 Mch-Chr2:4391070 Mch5g0670 Mch-Chr5:4518006 4.61E-188 dispersed
Mch2g0641 Mch-Chr2:4396942 Mch5g0670 Mch-Chr5:4518006 3.14E-189 dispersed
Mch3g1720 Mch-Chr3:18719533 Mch5g0670 Mch-Chr5:4518006 6.39E-191 dispersed
Mch4g2347 Mch-Chr4:24752181 Mch5g0670 Mch-Chr5:4518006 9.41E-178 dispersed
Mch5g0670 Mch-Chr5:4518006 Mch6g1637 Mch-Chr6:18103025 1.98E-286 dispersed
Mch1g1062 Mch-Chr1:13578296 Mch5g0670 Mch-Chr5:4518006 9.87E-141 transposed
Mch3g1322 Mch-Chr3:16018860 Mch5g0670 Mch-Chr5:4518006 2.47E-240 transposed
Mch5g0670 Mch-Chr5:4518006 Mch8g2856 Mch-Chr8:31430138 1.83E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77406 PF00069 Pkinase 6.90E-68 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0670 K08819 - csv:101217952 999.193