Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0689 ATGAAGCCGTACGGTCAGTCTATCGACGCCTCGCACTCCGATCCGTCGCCGGAATGGACCGCTCCGGGGCCCGATACTGCCCACGGAGAGCCGCTGTGGCAGTTGGGATCCAGAGAACGGGAATCGTACCCGGAACGCCCCGAAGAGGCCGACTGTATATACTACCTACGTACGGGATTTTGTGGATATGGCTCCCGTTGTAGGTTTAATCATCCCCGTGAGCGCACTGCGGTTTTAGGAGGTTCGAGACCTGGTGGAAGAGAGTATCCCGAACGAATAGGGCAGCCCGTATGCCAGTACTATATGAGGACGGGAATGTGCAAATTTGGCTCTTCCTGTAAGTATCACCATCCTCAGCAGGATAAAGGCTCTCTCAGCCCCGTGTCACTGAATTTCTACGGCTACCCACTACGGCCGGGTGAAAAGGAGTGCTCCTATTATTTGAAGAACGGGCAGTGCAAGTTCGGTGCTACGTGCAAATTTCATCACCCAGAACCAGCTGGCTTGCAATTTCCAGCACCATCACCTGTTCAGGTTACACCGGTACCAGCTCCAGTTCCTGGACCATCTGTTTATCCTCCTGTGCAGTCTCCGTCCGCTCATTCGTCACAACAATATGGAGTTATACTTGCAAGGCCTTCATTGCTGTCAAGCCCATATGTCCATGGCCCTTATGGTCCTATGTTGGTTTCCCCAGGCGTTGTTCAATTCCCAAGTTGGAGTCCTTACCCAGCACCTATGAGTCCAGTAGCCTCTCCCAGTGCTCAACCTTCTGTTGGGTCGGGGCAACTTTATGGTGTGGCACAAGTTTCGCCTTCTGCAACTGCGTATGCAGGATCTTATCAGCCCATGCCATCTGCTGGTCCGTCAAGTACTAGCCAGAAGGAGCACTCATTTCCAGAAAGACCTGGCCAACCAGAGTGTCAATATTACATGAGAACAGGGGATTGTAAATTCGAATCTTCTTGTAGATACCATCACCCACCAGAATTGGTTGCTTCAAGGTCAAGTGTTGTCCTTAGCCAACTAGGTCTTCCTCTACGCCCGGGTGCACCACCTTGTACTCACTTCATGCAACGAGGAATGTGCAAGTTCGGCCCAGCCTGCAAATTTGACCACTCGATGGAACGGCTTAGTTACAGTCCATCTGCATCATCTCTAGCTGATATGCCAGTGGCGCCCTACCCTGTGGGATCGGTAGCCGGTACTCTAGCCCCATCGTCCTCATCCTCAGAGTTGAGGCCTGAACATTTTTCAGGATCCAGAAAGGATTCTAACCCTTCAAGAATGTCATCATCAATGAGCACCTCTAGTGGATTGGTTGGCTCAACTACATCGAGGACGGAAATGCATTCTCATTCAAGTGTTCAACGGTCTTCTCAAAGTTCTGGCCCGTCGGTGAGCAGCACCACCAGCACCACCGGTGTGGAGGGTCGTACTTGA 1443 51.98 MKPYGQSIDASHSDPSPEWTAPGPDTAHGEPLWQLGSRERESYPERPEEADCIYYLRTGFCGYGSRCRFNHPRERTAVLGGSRPGGREYPERIGQPVCQYYMRTGMCKFGSSCKYHHPQQDKGSLSPVSLNFYGYPLRPGEKECSYYLKNGQCKFGATCKFHHPEPAGLQFPAPSPVQVTPVPAPVPGPSVYPPVQSPSAHSSQQYGVILARPSLLSSPYVHGPYGPMLVSPGVVQFPSWSPYPAPMSPVASPSAQPSVGSGQLYGVAQVSPSATAYAGSYQPMPSAGPSSTSQKEHSFPERPGQPECQYYMRTGDCKFESSCRYHHPPELVASRSSVVLSQLGLPLRPGAPPCTHFMQRGMCKFGPACKFDHSMERLSYSPSASSLADMPVAPYPVGSVAGTLAPSSSSSELRPEHFSGSRKDSNPSRMSSSMSTSSGLVGSTTSRTEMHSHSSVQRSSQSSGPSVSSTTSTTGVEGRT 480
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 4650873 4655489 - MC05g0607 Mch5g0689 688108
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0689 480 Gene3D - 347 395 - -
Mch5g0689 480 ProSiteProfiles Zinc finger C3H1-type profile. 138 166 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 ProSiteProfiles Zinc finger C3H1-type profile. 302 330 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SUPERFAMILY CCCH zinc finger 306 329 IPR036855 GO:0046872(InterPro)
Mch5g0689 480 MobiDBLite consensus disorder prediction 403 480 - -
Mch5g0689 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 350 375 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 303 329 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 95 119 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 140 165 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 MobiDBLite consensus disorder prediction 279 299 - -
Mch5g0689 480 Gene3D - 123 171 - -
Mch5g0689 480 Gene3D - 291 342 - -
Mch5g0689 480 Gene3D - 44 122 - -
Mch5g0689 480 MobiDBLite consensus disorder prediction 424 480 - -
Mch5g0689 480 ProSiteProfiles Zinc finger C3H1-type profile. 92 120 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SUPERFAMILY CCCH zinc finger 352 379 IPR036855 GO:0046872(InterPro)
Mch5g0689 480 SUPERFAMILY CCCH zinc finger 94 121 IPR036855 GO:0046872(InterPro)
Mch5g0689 480 ProSiteProfiles Zinc finger C3H1-type profile. 348 376 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 PANTHER PROTEIN PHOSPHATASE RELATED 38 376 IPR050974 GO:0003729(PANTHER)
Mch5g0689 480 SUPERFAMILY CCCH zinc finger 140 166 IPR036855 GO:0046872(InterPro)
Mch5g0689 480 SMART c3hfinal6 302 329 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SMART c3hfinal6 348 375 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SMART c3hfinal6 138 165 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 SMART c3hfinal6 92 119 IPR000571 GO:0046872(InterPro)
Mch5g0689 480 MobiDBLite consensus disorder prediction 1 32 - -
Mch5g0689 480 MobiDBLite consensus disorder prediction 279 305 - -
Mch5g0689 480 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0689 Mch-Chr5:4650873 Mch6g1426 Mch-Chr6:12910705 1.57E-23 dispersed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43360 PF00642 zf-CCCH 1.30E-07 CL0537 Mch TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0689 - - - 0.0