Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0731 TCTCCGCCCGGCTTCAATGATTTCGCCCTCAGCGGAAAAATTATGCTCAGCGCAATCATCATCCTTCTGTTCGTCGTCATTCTCATCATCTGCCTTCACCTCTACGCCCGCTGGTACGTTCTCCGAGCCCGCCGCCGCGGTCTCCAACCCGGCCGCCGTCGGAATCGCCTTATCTTCTATTTCGAACCGGAAAATCCCGCCGCCGCTCCCGTCCTCGCCCAACGCCGCGGCCTCGACGCCTCCGTTCTCAACTCTCTCCCTGTCTTCACTTTCACCTCCGAATCGCATCCCGATCCAATCGATTGCGCCGTCTGTTTGTCCGAATTCGAGGAGAACGAAAAGGGGCGTACTCTCCCCAAATGCGCCCATAGTTTCCATATCGATTGTATCGACATGTGGTTTCACTCTCACGCCACCTGTCCACTCTGTCGCTCGCCGGTCGAGGCCGTCCCGGAGATTCCTGTGGTGGTGGCGATTTCCGCCGCTGAATCTGAGAGCATCGAACCGGGTTCGAGTTCCTCCGGGTTCTGCGCCGAGTGCGACCGCGCGGACCGGATGGCTCTGTCTCATCCTTCGTCCTCCGCCGGGTCGAGGTCGTTTAGGGCACGGCGGAAGCCGGCGGAAGTGTCGATTGAGATCCCGAGGCGGGGCGACGGCGAGTTCGCTGCGGCGTCGCCGTCGACGACTCCGTTGACTCCGTCTTTCAAATCGCCGATTAGTCGCGTGATGTCTCTGTCGTTCAAGAGGATCATCGGCCGGGACAGGCGGGGCGGTGCGTCCCCGTCCGGCAATGCTGGGGGCTGCAGCTCCGTCGCCGGCGCCGAATCGGATATCGAACGGGGAAAGGAT 849 61.37 SPPGFNDFALSGKIMLSAIIILLFVVILIICLHLYARWYVLRARRRGLQPGRRRNRLIFYFEPENPAAAPVLAQRRGLDASVLNSLPVFTFTSESHPDPIDCAVCLSEFEENEKGRTLPKCAHSFHIDCIDMWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHPSSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKD 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4930616 4931464 + MC05g0643 Mch5g0731 688150

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0731 283 CDD RING-H2_EL5-like 101 144 - -
Mch5g0731 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 150 IPR013083 -
Mch5g0731 283 MobiDBLite consensus disorder prediction 188 236 - -
Mch5g0731 283 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Mch5g0731 283 FunFam RING-H2 finger protein ATL3 69 149 - -
Mch5g0731 283 Pfam Ring finger domain 101 144 IPR001841 -
Mch5g0731 283 SMART ring_2 102 143 IPR001841 -
Mch5g0731 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 212 - -
Mch5g0731 283 MobiDBLite consensus disorder prediction 201 215 - -
Mch5g0731 283 SUPERFAMILY RING/U-box 82 150 - -
Mch5g0731 283 MobiDBLite consensus disorder prediction 253 283 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0731 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0103 Mch-Chr4:682587 Mch5g0731 Mch-Chr5:4930616 4.80E-32 dispersed
Mch5g0731 Mch-Chr5:4930616 Mch9g0170 Mch-Chr9:1285709 1.39E-35 dispersed
Mch3g0082 Mch-Chr3:971130 Mch5g0731 Mch-Chr5:4930616 2.08E-30 transposed
Mch5g0731 Mch-Chr5:4930616 Mch7g1191 Mch-Chr7:15605993 1.29E-61 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0731 . 4 281 Rapid Response to Elicitors AT3G16720 50.5 6.6e-62 234.6
Mch5g0731 . 4 281 Rapid Response to Elicitors AT3G16720 50.5 6.6e-62 234.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005649 5 1 1 3 3 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 39