Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0731 TCTCCGCCCGGCTTCAATGATTTCGCCCTCAGCGGAAAAATTATGCTCAGCGCAATCATCATCCTTCTGTTCGTCGTCATTCTCATCATCTGCCTTCACCTCTACGCCCGCTGGTACGTTCTCCGAGCCCGCCGCCGCGGTCTCCAACCCGGCCGCCGTCGGAATCGCCTTATCTTCTATTTCGAACCGGAAAATCCCGCCGCCGCTCCCGTCCTCGCCCAACGCCGCGGCCTCGACGCCTCCGTTCTCAACTCTCTCCCTGTCTTCACTTTCACCTCCGAATCGCATCCCGATCCAATCGATTGCGCCGTCTGTTTGTCCGAATTCGAGGAGAACGAAAAGGGGCGTACTCTCCCCAAATGCGCCCATAGTTTCCATATCGATTGTATCGACATGTGGTTTCACTCTCACGCCACCTGTCCACTCTGTCGCTCGCCGGTCGAGGCCGTCCCGGAGATTCCTGTGGTGGTGGCGATTTCCGCCGCTGAATCTGAGAGCATCGAACCGGGTTCGAGTTCCTCCGGGTTCTGCGCCGAGTGCGACCGCGCGGACCGGATGGCTCTGTCTCATCCTTCGTCCTCCGCCGGGTCGAGGTCGTTTAGGGCACGGCGGAAGCCGGCGGAAGTGTCGATTGAGATCCCGAGGCGGGGCGACGGCGAGTTCGCTGCGGCGTCGCCGTCGACGACTCCGTTGACTCCGTCTTTCAAATCGCCGATTAGTCGCGTGATGTCTCTGTCGTTCAAGAGGATCATCGGCCGGGACAGGCGGGGCGGTGCGTCCCCGTCCGGCAATGCTGGGGGCTGCAGCTCCGTCGCCGGCGCCGAATCGGATATCGAACGGGGAAAGGAT 849 61.37 SPPGFNDFALSGKIMLSAIIILLFVVILIICLHLYARWYVLRARRRGLQPGRRRNRLIFYFEPENPAAAPVLAQRRGLDASVLNSLPVFTFTSESHPDPIDCAVCLSEFEENEKGRTLPKCAHSFHIDCIDMWFHSHATCPLCRSPVEAVPEIPVVVAISAAESESIEPGSSSSGFCAECDRADRMALSHPSSSAGSRSFRARRKPAEVSIEIPRRGDGEFAAASPSTTPLTPSFKSPISRVMSLSFKRIIGRDRRGGASPSGNAGGCSSVAGAESDIERGKD 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4930616 4931464 + MC05g0643 Mch5g0731 688150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0731 283 CDD RING-H2_EL5-like 101 144 - -
Mch5g0731 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 150 IPR013083 -
Mch5g0731 283 MobiDBLite consensus disorder prediction 188 236 - -
Mch5g0731 283 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
Mch5g0731 283 FunFam RING-H2 finger protein ATL3 69 149 - -
Mch5g0731 283 Pfam Ring finger domain 101 144 IPR001841 -
Mch5g0731 283 SMART ring_2 102 143 IPR001841 -
Mch5g0731 283 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 16 212 - -
Mch5g0731 283 MobiDBLite consensus disorder prediction 201 215 - -
Mch5g0731 283 SUPERFAMILY RING/U-box 82 150 - -
Mch5g0731 283 MobiDBLite consensus disorder prediction 253 283 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g0103 Mch-Chr4:682587 Mch5g0731 Mch-Chr5:4930616 4.80E-32 dispersed
Mch5g0731 Mch-Chr5:4930616 Mch9g0170 Mch-Chr9:1285709 1.39E-35 dispersed
Mch3g0082 Mch-Chr3:971130 Mch5g0731 Mch-Chr5:4930616 2.08E-30 transposed
Mch5g0731 Mch-Chr5:4930616 Mch7g1191 Mch-Chr7:15605993 1.29E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0731 - - - 0.0