Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0733 ATGTCTGATGGCGATGGAGGGAATAAGAAGGCTGCCCTCATCGGCGTGTCTTCGCTGTTTCTCGTTGCGATGGTAGTTGCGGTGGCTGTCGGCGTCAACAAAAGCCCCGACGGCGGTTCGGGGGAGATCACGACCTCCACCAAGTCGGTGAAGGCCATCTGTCAGCCCACCGATTACCCAGAAACATGTGAGAAAACGCTCGAGGCGGCCGCCGTCAATACGAGCGACCCACGTGAGCTCATCAAGGTCGGATTCAACACCGCCGTCGAACAACTCAGATTTGCCATCAGCAACAGCTCCACCTTGAAATCGGCGGCCGCCGACCCTAAGGCCAAGCTGGCACTCGACGACTGCGGCGAGCTGGCCGATTACGCCATCGACGATCTCAAGAATTCGTTCAACAAAATCACCGACAATTTCGACATGGACAAAATTGACGATTACATGGAGGATCTGAAGGTGTGGCTGAGTGCTGCGCTGACGTATCAGGGGATTTGCCTGGATGGATTCGAGAACGTGACGGGTGACACTAGGGAGAAGATGAAGGGTGTACTCAAAATGTCGCAGGAATTGACCACCAATGGGCTCACCATGGTGGATGAAGTCTCATCCATCATGACCTCGTTTGGGCTTCCGGCGATCGGGCGACGACTGATGACGACAAAGGAATCCAATGCCAATGCAGAGGAAACAGAGTCGGAGCCGTCGTGGGTGAGTCAGAGGAGGGCGCTGCTCCAAGCGAGTCCAGGAAACATCAAGGCAGACGTGGTGGTGGCTCAGGACGGAAGCGGGAAGTACAAGACAATTAACCAAGCTCTGAAGGACATCCCAACGGCAAAAGACAACCCCACTAACAAAACTTTTGTAATTCACATTAAGGCTGGAATTTACAAGGAGCAAGTGCTTATTGACAAACACATGACCTGGGTCATGATGGTCGGCGACGGCCCCACCAAGACCAAGATCACAGGCAGCTTGAACTTCATCGACGGCATCACCACATTCAAAACCGCTACAGTTGCTGTGATTGGGACGAACTTCATCGGCAAAGACTTGGGGTTCGAGAATTCAGCAGGAGCAGCGAAGCACCAGGCTGTGGCGCTTCGAGTTCAATCCGACATGTCCATCTTCTACAACTGTCAAATGGATGGTTATCAAGACACCCTGTACACGCACGCTTCACGGCAATTCTACCGGGACTGCACCATCACCGGCACCATCGACTTCATCTTCGGCAACGCTGCAGCGATCTTCCAGAACTGCAAGATCTTGGTGAGGAAGCCAATGGAGAACCAGCAATGCATTGTGACGGCCCAGGGGAGGACTCAAAGGCGGGAGCCGACCGCAATCATCCTCCAGAACTGCGTGATCGCGTCGGACCCGGCATACTTCCCGGTCCGAATGGTGAACAAGGCCTACCTGGGGCGGCCTTGGAAGGAGTACTCGAGAACCATCATCATGCAGTCCCAAATCGACGACTTGATCCAGCCGGAGGGGTGGCTCCCATGGCAGGGGAACTTCGCTTTGAAAACTCTGTTTTATGCAGAGTTCAACAACAGAGGGCCCGGAGCAGCCAAGGACAAGCGCGTCAAATGGCGAGGCATCAAGCAAATTACGCCGGAGCACGCCGTGGATTTCACCGTTGGGAGGTTTCTTCGTGGGGATCCATGGATCAAGCGCACCGGAATACCATATACTTCCGGCATGATGGCAGTGTAG 1719 54.39 MSDGDGGNKKAALIGVSSLFLVAMVVAVAVGVNKSPDGGSGEITTSTKSVKAICQPTDYPETCEKTLEAAAVNTSDPRELIKVGFNTAVEQLRFAISNSSTLKSAAADPKAKLALDDCGELADYAIDDLKNSFNKITDNFDMDKIDDYMEDLKVWLSAALTYQGICLDGFENVTGDTREKMKGVLKMSQELTTNGLTMVDEVSSIMTSFGLPAIGRRLMTTKESNANAEETESEPSWVSQRRALLQASPGNIKADVVVAQDGSGKYKTINQALKDIPTAKDNPTNKTFVIHIKAGIYKEQVLIDKHMTWVMMVGDGPTKTKITGSLNFIDGITTFKTATVAVIGTNFIGKDLGFENSAGAAKHQAVALRVQSDMSIFYNCQMDGYQDTLYTHASRQFYRDCTITGTIDFIFGNAAAIFQNCKILVRKPMENQQCIVTAQGRTQRREPTAIILQNCVIASDPAYFPVRMVNKAYLGRPWKEYSRTIIMQSQIDDLIQPEGWLPWQGNFALKTLFYAEFNNRGPGAAKDKRVKWRGIKQITPEHAVDFTVGRFLRGDPWIKRTGIPYTSGMMAV 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4939153 4941409 - MC05g_new0089 Mch5g0733 688152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0733 572 Gene3D - 249 569 IPR012334 -
Mch5g0733 572 SMART PMEI_2 45 198 IPR006501 GO:0004857(InterPro)
Mch5g0733 572 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Mch5g0733 572 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Mch5g0733 572 FunFam Pectinesterase 46 203 - -
Mch5g0733 572 FunFam Pectinesterase 249 569 - -
Mch5g0733 572 Pfam Pectinesterase 255 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Mch5g0733 572 NCBIfam pectinesterase inhibitor domain 22 194 IPR006501 GO:0004857(InterPro)
Mch5g0733 572 CDD PMEI-like_3 52 204 - -
Mch5g0733 572 PANTHER PECTINESTERASE 10 559 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Mch5g0733 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 202 IPR035513 -
Mch5g0733 572 Pfam Plant invertase/pectin methylesterase inhibitor 48 198 IPR006501 GO:0004857(InterPro)
Mch5g0733 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 202 IPR035513 -
Mch5g0733 572 SUPERFAMILY Pectin lyase-like 253 568 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0733 Mch-Chr5:4939153 Mch7g1193 Mch-Chr7:15618878 1.24E-254 dispersed
Mch2g1641 Mch-Chr2:13950534 Mch5g0733 Mch-Chr5:4939153 1.18E-90 transposed
Mch5g0733 Mch-Chr5:4939153 Mch7g1192 Mch-Chr7:15614141 1.81E-242 wgd
Mch5g0733 Mch-Chr5:4939153 Mch8g1006 Mch-Chr8:7149800 3.99E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0733 K01051 - csv:101212686 861.292