Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0747 ATGTCTACGGCCAGTTCGAGCTCTGTCAGGAAAGCCGCCGAAGCTGTCCCCGACCAGTTTCCGGCCGGCCTCCGTGTCCTGGTTGTCGATGATGATCCGACCTGCCTTATGATCTTGGAGAAGATGCTTCGTATTTGCCGCTACGAAGTAACAAAATGTAGTCGAGCAGAGGATGCGCTGTCTCTTCTCAGACGGTATAAAAATGGGTTCGATATTGTTCTGAGCGACGTCCACATGCCCGACATGGATGGATTCAAGCTTCTGGAATACATTGGATTGGAAATGGACTTGCCTGTTATCATGATGTCGGTTGACGATGGGAAAAACGTCGTCATGAAGGGAGTGACTCACGGTGCTTGTGACTATCTAATTAAACCAGTTCGAATTGAAGCATTGAAGAACATATGGCAGCATGTTGTTCGCAAGCGAAAGAATGAATGGAAGGATTTGGAGCAATCTGGATGTGTGGATGATGTAGATCGGCAGCAAAAAACGAATGAAGATGCAGATTATTCGTCATCAGCTAATGAAGGGAGTTGGAGGAACTCAAAGAGGAGGAAGGATGATGTAGAAGATGCCGAAGAGAGAGACGATTCATCGACCCTAAAGAAACCAAGGGTCGTTTGGTCCGTTGAGCTGCATCAACAGTTTGTGGCTGCTGTTAATCAACTAGGAATTGATAAGGCTGTTCCCAAGAAGATTCTGGAGTTGATGAATGTTCCTGGACTCACTAGAGAAAACGTCGCCAGTCACCTTCAGAAATATCGCTTGTATCTGAGAAGGCTTAGTGGAATCACACAACACCAGAGTAATTTGAACAACACATTCATGAGTGCCCAAGAAGCAACATTTGGGCCAATGTCGTCCCTGAATGGACTCGATCTCCAAACTCTCGCTGCTGCCAGTCAACTCCAGCCACAAAGCCTTGCTACACTCCAAGCAGCTGGATTTGGTAGGCCTACCGCAAAATCGGGCTTGCCCATGCCTCTTGTTGATCAAAGGAATCACATCTTTAGCTTTGAAAATCCGAAGTTGAGATTCGGTGACGGGCAACAGCAACATCTGAACAGTAGTAAACCGGTGAACCTACTTCATGGAATTCCAACAACAATGGAGCCAAAACAGCTCGCTAATCTACAGCATTCTGCACAATCTCATGGGAACATGACAATGCAAGCTAATGCTCAAGTAGGCCAAAGTAGCTCTCAACTCATGCAGACACCTCAACCACAAGCTCGAGCACAGATCCTTAACGAAAGTACCTCAACTAGTGTAACGAGGCTTCCACCAACAATACAGCAGTCGATTTTGCCAAACGGAACCACCGGTGGGGTTTTGGCAAGGAATGAATTCACCAATAACAGTAGAGGTGGAGGGTACAATCTAGTTACACCAGCCTCAACAATGATAAATTTTCCCATGAACCAAACTGCAGAGTTGCCGGGTAACAGTTTTCCTCTTCAAAGTACCCCAGGGATGTCAAGTATAGTACAGAAGGGAAGATTCTCGGATGGGGTTAACTCAGACATTAAAGGATCCGAAGGTTTCGTGCCAAGCTACGAAATGTTTAGGGATCTGCATCCTCAGAAGCCCCATGATTGGGACTTGCAACACGTAGGTGTGACCTTCGATGCATCTCAAGGTAGTCTCGCACTCGACATTCCTCCGTCAGCTTTTGCTCATCAAGGGTATGCCTCTAGCCAACAAAACGGACAAAACAGGAATGCAGCTACTGCTGGCAAGGCCATGTTCTTGTTGGAAGAAGAAACTGGCAATGGGAATTCACAAAATATGGGTCAACAACTCAACTCTATTTTCGTCGATGGTTCCGTTAGAGTTAAAGTTGAAAGGGTAGCTCCTGATACCGGCAGTCAAACTGACCTTTTTCCCGAACACTTTGGTCAGGAGGATCTAATGAGTGCACTTCTTAAGCAGCAACAGGGAAGCATTGGAACAGCTGAAAGTGAGTTGGAATGGGTATTTCATGCATAG 1992 46.39 MSTASSSSVRKAAEAVPDQFPAGLRVLVVDDDPTCLMILEKMLRICRYEVTKCSRAEDALSLLRRYKNGFDIVLSDVHMPDMDGFKLLEYIGLEMDLPVIMMSVDDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSGCVDDVDRQQKTNEDADYSSSANEGSWRNSKRRKDDVEDAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGITQHQSNLNNTFMSAQEATFGPMSSLNGLDLQTLAAASQLQPQSLATLQAAGFGRPTAKSGLPMPLVDQRNHIFSFENPKLRFGDGQQQHLNSSKPVNLLHGIPTTMEPKQLANLQHSAQSHGNMTMQANAQVGQSSSQLMQTPQPQARAQILNESTSTSVTRLPPTIQQSILPNGTTGGVLARNEFTNNSRGGGYNLVTPASTMINFPMNQTAELPGNSFPLQSTPGMSSIVQKGRFSDGVNSDIKGSEGFVPSYEMFRDLHPQKPHDWDLQHVGVTFDASQGSLALDIPPSAFAHQGYASSQQNGQNRNAATAGKAMFLLEEETGNGNSQNMGQQLNSIFVDGSVRVKVERVAPDTGSQTDLFPEHFGQEDLMSALLKQQQGSIGTAESELEWVFHA 663
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5033128 5037699 + MC05g0657 Mch5g0747 688166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0747 663 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
Mch5g0747 663 FunFam Two-component response regulator 24 161 - -
Mch5g0747 663 Gene3D - 24 156 - -
Mch5g0747 663 Gene3D - 201 263 - -
Mch5g0747 663 CDD REC_typeB_ARR-like 26 140 - -
Mch5g0747 663 MobiDBLite consensus disorder prediction 180 201 - -
Mch5g0747 663 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
Mch5g0747 663 PIRSF RR_ARR_type-B 4 657 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Mch5g0747 663 FunFam Two-component response regulator 200 263 - -
Mch5g0747 663 SUPERFAMILY CheY-like 23 147 IPR011006 -
Mch5g0747 663 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 344 IPR045279 GO:0009736(InterPro)
Mch5g0747 663 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Mch5g0747 663 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
Mch5g0747 663 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Mch5g0747 663 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Mch5g0747 663 MobiDBLite consensus disorder prediction 158 201 - -
Mch5g0747 663 NCBIfam myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0515 Mch-Chr11:3306819 Mch5g0747 Mch-Chr5:5033128 9.10E-97 dispersed
Mch5g0747 Mch-Chr5:5033128 Mch8g3032 Mch-Chr8:32922850 3.23E-84 dispersed
Mch2g0880 Mch-Chr2:5993504 Mch5g0747 Mch-Chr5:5033128 2.18E-20 transposed
Mch5g1325 Mch-Chr5:14125354 Mch5g0747 Mch-Chr5:5033128 1.38E-23 transposed
Mch8g0075 Mch-Chr8:417170 Mch5g0747 Mch-Chr5:5033128 3.88E-90 transposed
Mch5g0747 Mch-Chr5:5033128 Mch7g1214 Mch-Chr7:15730654 1.64E-264 wgd
Mch5g0747 Mch-Chr5:5033128 Mch9g0687 Mch-Chr9:5174082 3.39E-16 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43364 PF00072 Response_reg 1.80E-22 CL0304 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0747 K14491 - csv:101209013 1154.81