Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0771 ATGGTTTCTAGTAATCGAGCGACGCATGCTCATCAGCAACAAGCACAGTCCTCGAACATTAATACGAGCAATTTGCGATCTCATCGTACAGAATCCATCAGCAAAGCCATAGCACAGTACACCGCCGATGCTCGCCTTCACGCAGTCTTCGAACAGTCAGGTGAGTCCGGTAAATCTTTTGACTACTCACAGTCTTTAAGAACTTCTACGCAATCTGTACCCGAGCAGCAAATTACTGCTTACTTATCGAAGATTCAAAGGGGCGGCCATATCCAGCCCTTTGGCTGTATGATAGCTATCGATGAGGCCACTTTTCGGGTTATTGCATACAGCGAGAACGCTCGCGAATTGCTTGGTCTTACGCCTCAATCAGTGCCGAGCCTTGAAAAACCTGAGATCCTCACAATTGGGACTGATGTACGGAACTTGTTCGCTTCCTCCAGCGCAATTCTGCTCGAGAAGGCATTTGGGGCTCGAGAAATTACTTTGTTGAATCCGGTTTGGATTCATTCCAAGAATTCTGGGAAGCCCTTTTATGCTATTTTGCATAGGATTGATGTGGGAATCGTGATTGATTTGGAGCCTGCAAGAACGGAGGATCCTGCCCTTTCTATTGCTGGGGCAGTCCAATCGCAGAAGCTAGCAGTACGTGCAATTTCTCAGTTACAATCACTCCCTGGTGGAGATATTAAACTGTTGTGTGATACTGTGGTTGAGAGTGTGAGGGAGCTTACTGCATATGATAGAGTTATGGTGTATAAATTCCATGAGGATGAGCACGGTGAGGTTGTGGCTGAAAGCAAGAGGCCTGACTTAGAACCATACATTGGATTGCATTATCCCTCCACTGATATTCCTCAGGCATCAAGGTTTTTGTTTAAGCAGAACCGAGTTCGGATGATTGTTGACTGCCATGCATCTCCAGTTCTTGTGATTCAGGATGCAGGGCTTATGCAACCTCTATGCTTAGTGGGGTCAACTCTTCGTGCCCCCCATGGCTGTCATGCCCAGTATATGGCCAATATGGGCTCCATCGCTTCGTTAGCAATGGCAGTTGTTATCAATGGTAATGATGATGAAGCTATGGGTGTGAGAAACTCAACGAGGCTTTGGGGTTTGGTTGTCTGTCATCATACTTCTGCTCGGTGTATTCCATTCCCACTTCGGTATGCCTGTGAATTTCTAATGCAAGCCTTTGGACTTCAACTTAATATGGAATTGCAGTTGGCTTCACAGATGTCTGAGAAACATGTTTTAAGGACCCAAACTCTCTTGTGTGACATGCTTCTTCGTGATTCTCCTACTGGCATTATTACGCAAAGTCCGAGCATCATGGACCTCGTAAAATGTGATGGGGCAGCTCTTTACTATCAAGGGAAATATTACCCACTGGGTGTGACACCGACTGAAGCCCAAATAAAGGATATTGTGGAATGGTTGTTGGCTTTCCATGGAGATTCGACTGGTTTAAGTACGGATAGCTTGGCTGATGCTGGATATCCTGGGGCAGCCTTGCTTGGTGATGCAGTTTGTGGAATGGCTGTTGCTTATATCACAAAAAGGGACTTTTTGTTTTGGTTCCGATCCCACACAGCCAAAGAGGTCAAGTGGGGTGGTGCAAAGCATCACCCAGAGGATAAGGATGATGGCCAAAGAATGCATCCACGTTCTTCATTCAAGGCATTCCTGGAAGTGGTAAAATCCCGTAGTTTACCATGGGAGAATGCGGAAATGGATGCAATTCACTCATTGCAGCTTATTCTGCGAGATTCATTTAAGGATGATGTTGCACTCAATTCTAAGGCAGTTGTGCATCCTCAATTGGGTGATCTTGACTTGCAAGGGATCGATGAGCTCAGCTCAGTTGCAAGAGAAATGGTCAGGTTGATTGAGACTGCGACTGCTCCTATCTTTGCTGTAGATGCTGATGGTCGTATCAATGGATGGAATGCTAAGATTGCTGAGTTGACTGGGATTGCCGTTGAGGAAGCTATGGGGAAATCCCTGGCTCGTGATCTCGTGTATAAAGAATCTGAAGAAACAGTTGACAAACTTGTTTCCCGGGCTTTAAAAGGTGAAGAAGATAAAAATCTAGAGATAAAATTGAGGACATTTGGACCAGAGGATCAAAAGACGCCCGTTTTTGTGGTTGTCAATGCTTGCTCTAGCAGGGACTACACTGATAATATAATAGGCGTCTGTTTTGTTGGTCAAGATGTTACCTGCCAAAAAGTGTTCATGGACAAGTTTATTAGCATACAAGGTGATTACAAGGCTATTATTCATAGTCCCAGTCCTCTTATTCCTCCAATATTTGCTTCAGACGACAATACATGTTGCTCAGAATGGAATACTGCCATGGAAAAGCTCACTGGATGGTCCAGAGAGGATATAATTGGAAAAATGCTAGTAGGAGAAGTTTTTGGAAGTTGTTGTCGACTTAAGGGTCCAGATGCATTGACAAAATTTATGATTGTTTTGCACAGTGCAATTGGAGGGCAGGACAATGAAAAATTCCCCTTTTCTTTTTATGACAAAAAGGGGAAATATGTGCAAGCTCTCTTGACAGCAAATAAGAGGATGAATATGGATGATCAGATTGTTGGAGCTTTCTGCTTCTTACATATAGCTAGTCCTGAATTGCAGCAAACTCTTAGAATGCAGAGGCAACAGGAGAAGAACCGTTTTGCCAGGATGAAAGAGCTGACTTACATTTGCCAGGAAGTGAAGAGTCCTTTGAGTGGTATACGCTTTACTAACTCACTTTTGGAGGCTACAGATTTAAGCGATGATCAAAAGCAGTTTCTCGAGACCAGTGTTGCTTGTGAAAAGCAGATGTTAAAGATTATAGAAGATATGGATTTGGAAAGTATTGATGATGGTACAATGGAGCTTGAGAAGACAGAGTTCTTATTGGGAAGTGTTATTAATGCTGTTGTTAGCCAAGCAATGATATTACTCAGAGAAAGAAACTTACAACTGATTCGTGACATACCAGAAGAAGTAAAGACTATGGCCGTTATTGGCGATCAAGTGAGGATTCAACAAGTTTTGGCTGATTACTTGTTGAATATGGTGCGATACGCACCAGCTCCCGAGGGCTGGGTAGAAATACGCGTCTGTCCAATCCTAAAGCAAAACTCAGAGGGAATAACTCTCGCACGCACTGAATTCAGGATTGTATGCCCTGGGGAAGGCCTACCTCCTGAGTTGGTTCAGGACATGTTTCATAGTGGCAGATGGGTGACTCAAGAAGGATTGGGCTTGAGCATGTGCAGGAAGATTCTGAAGCTCATGAATGGTGAAGTCCAATACATCAGAGAGTCTGAAAGATGTTATTTCTTGATCACACTCGAACTCCCCTTGACGGAGAGAAGCTTAAGCGATGTCGGTTAG 3396 44.11 MVSSNRATHAHQQQAQSSNINTSNLRSHRTESISKAIAQYTADARLHAVFEQSGESGKSFDYSQSLRTSTQSVPEQQITAYLSKIQRGGHIQPFGCMIAIDEATFRVIAYSENARELLGLTPQSVPSLEKPEILTIGTDVRNLFASSSAILLEKAFGAREITLLNPVWIHSKNSGKPFYAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTAYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPSTDIPQASRFLFKQNRVRMIVDCHASPVLVIQDAGLMQPLCLVGSTLRAPHGCHAQYMANMGSIASLAMAVVINGNDDEAMGVRNSTRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQMSEKHVLRTQTLLCDMLLRDSPTGIITQSPSIMDLVKCDGAALYYQGKYYPLGVTPTEAQIKDIVEWLLAFHGDSTGLSTDSLADAGYPGAALLGDAVCGMAVAYITKRDFLFWFRSHTAKEVKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFKDDVALNSKAVVHPQLGDLDLQGIDELSSVAREMVRLIETATAPIFAVDADGRINGWNAKIAELTGIAVEEAMGKSLARDLVYKESEETVDKLVSRALKGEEDKNLEIKLRTFGPEDQKTPVFVVVNACSSRDYTDNIIGVCFVGQDVTCQKVFMDKFISIQGDYKAIIHSPSPLIPPIFASDDNTCCSEWNTAMEKLTGWSREDIIGKMLVGEVFGSCCRLKGPDALTKFMIVLHSAIGGQDNEKFPFSFYDKKGKYVQALLTANKRMNMDDQIVGAFCFLHIASPELQQTLRMQRQQEKNRFARMKELTYICQEVKSPLSGIRFTNSLLEATDLSDDQKQFLETSVACEKQMLKIIEDMDLESIDDGTMELEKTEFLLGSVINAVVSQAMILLRERNLQLIRDIPEEVKTMAVIGDQVRIQQVLADYLLNMVRYAPAPEGWVEIRVCPILKQNSEGITLARTEFRIVCPGEGLPPELVQDMFHSGRWVTQEGLGLSMCRKILKLMNGEVQYIRESERCYFLITLELPLTERSLSDVG 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5251230 5257225 + MC05g0679 Mch5g0771 688190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0771 1131 SMART HisKA_10 897 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch5g0771 1131 SUPERFAMILY GAF domain-like 209 404 - -
Mch5g0771 1131 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1009 1122 IPR003594 -
Mch5g0771 1131 Pfam Phytochrome region 420 593 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 FunFam Phytochrome 769 877 - -
Mch5g0771 1131 FunFam Phytochrome 960 1126 - -
Mch5g0771 1131 FunFam Phytochrome 618 750 - -
Mch5g0771 1131 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 437 457 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 522 541 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 738 758 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 555 573 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 625 641 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 644 659 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 718 735 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Mch5g0771 1131 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Mch5g0771 1131 Gene3D - 879 959 - -
Mch5g0771 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 627 736 IPR035965 -
Mch5g0771 1131 Pfam GAF domain 230 407 IPR003018 GO:0005515(InterPro)
Mch5g0771 1131 Pfam His Kinase A (phospho-acceptor) domain 899 961 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch5g0771 1131 Gene3D - 412 585 IPR043150 -
Mch5g0771 1131 Gene3D PAS domain 620 744 - -
Mch5g0771 1131 Gene3D PAS domain 769 878 - -
Mch5g0771 1131 ProSiteProfiles PAS repeat profile. 756 808 IPR000014 -
Mch5g0771 1131 SMART gaf_1 229 417 IPR003018 GO:0005515(InterPro)
Mch5g0771 1131 Gene3D - 960 1127 IPR036890 -
Mch5g0771 1131 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 397 IPR016132 -
Mch5g0771 1131 Gene3D - 210 568 IPR029016 -
Mch5g0771 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 770 874 IPR035965 -
Mch5g0771 1131 FunFam Phytochrome 878 959 - -
Mch5g0771 1131 Pfam PAS fold 756 875 IPR013767 GO:0006355(InterPro)
Mch5g0771 1131 Pfam PAS fold 625 740 IPR013767 GO:0006355(InterPro)
Mch5g0771 1131 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 972 1121 IPR036890 -
Mch5g0771 1131 CDD HATPase_Phy-like 1009 1120 IPR044767 -
Mch5g0771 1131 SMART HKATPase_4 1009 1124 IPR003594 -
Mch5g0771 1131 NCBIfam PAS domain S-box protein 629 742 IPR000014 -
Mch5g0771 1131 CDD PAS 633 740 IPR000014 -
Mch5g0771 1131 ProSiteProfiles PAS repeat profile. 622 693 IPR000014 -
Mch5g0771 1131 Pfam PAS fold 80 196 IPR013654 GO:0006355(InterPro)
Mch5g0771 1131 SUPERFAMILY GAF domain-like 415 592 - -
Mch5g0771 1131 Gene3D PAS domain 84 332 - -
Mch5g0771 1131 PANTHER OS08G0260000 PROTEIN 20 1001 - -
Mch5g0771 1131 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 199 IPR035965 -
Mch5g0771 1131 CDD HisKA 897 953 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch5g0771 1131 CDD PAS 767 875 IPR000014 -
Mch5g0771 1131 PIRSF Phytochrome_conventional 12 1129 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
Mch5g0771 1131 ProSiteProfiles Histidine kinase domain profile. 904 1124 IPR005467 -
Mch5g0771 1131 FunFam Phytochrome 412 542 - -
Mch5g0771 1131 SMART pas_2 755 825 IPR000014 -
Mch5g0771 1131 SMART pas_2 624 691 IPR000014 -
Mch5g0771 1131 MobiDBLite consensus disorder prediction 1 28 - -
Mch5g0771 1131 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 953 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0771 K12121 - - csv:101212197 2153.64
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g1027 Mch-Chr3:13934016 Mch5g0771 Mch-Chr5:5251230 0 dispersed
Mch5g0771 Mch-Chr5:5251230 Mch8g1989 Mch-Chr8:22070940 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004550 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 3 1 1 42