Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0778 ATGGCGTCGTCTCTGATTCTGAATCCTGCGGCGAGTTCTGAGCGATCGCGTGATTCGTCCAGAAAGAAAAAGAAAAAGAAATCGGGTAGAGAAGAAGATCGACAAGATCAGGATCGTCACATCAAGTGGAAATCACAAGCGCAGCATCAAGTTTACTCATCGAAGCTGTTGCGCGCCTTGAGTCAAGTCAGGATCAGTCCAGCTCCTTCCGCATCGGCTCCGAACGAGACGCCGCGGCGGGGCCGAGAGGTCCGGGAGGCGGCCGATACGGTTCTGGCGATGACAGCGAAAGGGAGAAGTAGGTGGAGCAGAGCAATCTTGAGGAACCGTCTGAAGCTGAAGTTCAGAAAGCAGAATCGGCAGAAGCCGCGTGGGACCGGAAACAGCCGAACGAATAAGAAGCCGAGAGTGAGCGTTTTGCGGTTGAGAGGGAAGGGACTACCGACCGTACAGAGAAAAGTCCGTCTTCTCGGCCGTCTGGTTCCCGGCTGCCGGAAGCAACCGCTGCCGGTAATTCTGGATGAAGCAACCGATTACATAGCGGCACTGGAGATGCAGATCCGAGTTATGAACGCCATAGCCAATTTGGTTTCCGGTTCTTCTTCTGGTACCGATTCTTCTATCTCGCCATCACCTACC 639 54.15 MASSLILNPAASSERSRDSSRKKKKKKSGREEDRQDQDRHIKWKSQAQHQVYSSKLLRALSQVRISPAPSASAPNETPRRGREVREAADTVLAMTAKGRSRWSRAILRNRLKLKFRKQNRQKPRGTGNSRTNKKPRVSVLRLRGKGLPTVQRKVRLLGRLVPGCRKQPLPVILDEATDYIAALEMQIRVMNAIANLVSGSSSGTDSSISPSPT 213
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5308372 5309010 + MC05g0684 Mch5g0778 688197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0778 213 CDD bHLH_AtIBH1_like 139 194 IPR044549 GO:0006355(InterPro)
Mch5g0778 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 197 IPR036638 GO:0046983(InterPro)
Mch5g0778 213 MobiDBLite consensus disorder prediction 1 49 - -
Mch5g0778 213 MobiDBLite consensus disorder prediction 114 129 - -
Mch5g0778 213 PANTHER TRANSCRIPTION FACTOR IBH1-LIKE 1 43 197 IPR044660 GO:0006355(InterPro)
Mch5g0778 213 MobiDBLite consensus disorder prediction 114 135 - -
Mch5g0778 213 MobiDBLite consensus disorder prediction 25 45 - -
Mch5g0778 213 MobiDBLite consensus disorder prediction 66 86 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0778 Mch-Chr5:5308372 Mch6g2769 Mch-Chr6:29141378 5.98E-39 dispersed
Mch5g0778 Mch-Chr5:5308372 Mch7g1246 Mch-Chr7:15974242 7.13E-73 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0778 - - - 0.0