Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0780 ATGGAGAAGAAGAAATTTGAAGAGTTCGTGGGGTCGGAGAATTGCGCCGTAAGTGATTCTCCGATGGTGTTTTCCGACGAGTTTCCGGGCGGCGGCGGCATCTTCGACATGTCATGTGAGAGTAGTGATAAAGGTTGTTCCTTTGACTTGTTATTTGGAATCCATGACTATTACAACCCCTCTTTGTTCGATTTGATGTCCTCCGTGCCGCCGCTGCTGCAGCAGTCGCCGCCGCTCTCCTCGCCGGCATCCACCGTGCCGGAGTCGTCGGAGGTGCTCAACGCCCCGCCCACGCCTAATTCTTCCTCCGTCTCTTCCTCCTCCGGCGAAGAACTTGCCAAAGCAAGTGAAGAGGCTGTTGAGAAGAATAATAGTGAAAAAGCTTCTAAATTATTGTTGAAGGCAAAAAAGAAGAACCAGAAGAGGCAAAGAGAACCCAGATTTGCTTTCATGACTAAGAGTGATATCGATCATCTAGACGACGGCTACCGCTGGCGGAAGTACGGCCAAAAAGCCGTTAAAAATAGCCCCTATCCCAGAAGCTATTATCGTTGCACCACGGCGGGGTGCGGTGTGAAGAAGAGAGTGGAGCGGTCCTCCGGCGACCACTCCATCGTTGTGACAACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCGCGGCGAGTCATGTCGGAATCCAACAGTTGCCTCGTCGCCGATCACAACCCCACCGCCACCACCGCCACGGGGCATTTGTTCCACCAGCCCTTCATGTACAACCCGACGCCATTTGTAACGGTGAACTCATCATCGGTGAGTCCGCATCCTCCTCCTCCCCTTCCGTCCCCGTCGTCGCTGCTCCGGGACGACGGGCTTCTGCAGGACGTGGTGCCATTGCAAATGAGGAAGGAGCCAAAAGATGAGCAAAATGGGTGA 924 54.0 MEKKKFEEFVGSENCAVSDSPMVFSDEFPGGGGIFDMSCESSDKGCSFDLLFGIHDYYNPSLFDLMSSVPPLLQQSPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSGEELAKASEEAVEKNNSEKASKLLLKAKKKNQKRQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRRVMSESNSCLVADHNPTATTATGHLFHQPFMYNPTPFVTVNSSSVSPHPPPPLPSPSSLLRDDGLLQDVVPLQMRKEPKDEQNG 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5334212 5336365 + MC05g0686 Mch5g0780 688199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0780 307 Gene3D WRKY domain 146 212 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0780 307 MobiDBLite consensus disorder prediction 114 128 - -
Mch5g0780 307 FunFam WRKY transcription factor 57 145 219 - -
Mch5g0780 307 SMART WRKY_cls 159 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0780 307 MobiDBLite consensus disorder prediction 74 128 - -
Mch5g0780 307 MobiDBLite consensus disorder prediction 74 112 - -
Mch5g0780 307 SUPERFAMILY WRKY DNA-binding domain 151 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0780 307 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 95 228 IPR044810 GO:0003700(InterPro)
Mch5g0780 307 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0780 307 MobiDBLite consensus disorder prediction 264 307 - -
Mch5g0780 307 Pfam WRKY DNA -binding domain 160 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0780 Mch-Chr5:5334212 Mch9g0642 Mch-Chr9:4818780 1.83E-45 dispersed
Mch5g0780 Mch-Chr5:5334212 Mch7g1247 Mch-Chr7:15992564 6.69E-58 wgd
Mch5g0780 Mch-Chr5:5334212 Mch8g1065 Mch-Chr8:7514298 1.56E-17 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43368 PF03106 WRKY 1.00E-25 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0780 - - - 0.0