Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0780 | ATGGAGAAGAAGAAATTTGAAGAGTTCGTGGGGTCGGAGAATTGCGCCGTAAGTGATTCTCCGATGGTGTTTTCCGACGAGTTTCCGGGCGGCGGCGGCATCTTCGACATGTCATGTGAGAGTAGTGATAAAGGTTGTTCCTTTGACTTGTTATTTGGAATCCATGACTATTACAACCCCTCTTTGTTCGATTTGATGTCCTCCGTGCCGCCGCTGCTGCAGCAGTCGCCGCCGCTCTCCTCGCCGGCATCCACCGTGCCGGAGTCGTCGGAGGTGCTCAACGCCCCGCCCACGCCTAATTCTTCCTCCGTCTCTTCCTCCTCCGGCGAAGAACTTGCCAAAGCAAGTGAAGAGGCTGTTGAGAAGAATAATAGTGAAAAAGCTTCTAAATTATTGTTGAAGGCAAAAAAGAAGAACCAGAAGAGGCAAAGAGAACCCAGATTTGCTTTCATGACTAAGAGTGATATCGATCATCTAGACGACGGCTACCGCTGGCGGAAGTACGGCCAAAAAGCCGTTAAAAATAGCCCCTATCCCAGAAGCTATTATCGTTGCACCACGGCGGGGTGCGGTGTGAAGAAGAGAGTGGAGCGGTCCTCCGGCGACCACTCCATCGTTGTGACAACGTACGAAGGCCAACACACCCACCAAAGTCCGGTAATGCCGCGGCGAGTCATGTCGGAATCCAACAGTTGCCTCGTCGCCGATCACAACCCCACCGCCACCACCGCCACGGGGCATTTGTTCCACCAGCCCTTCATGTACAACCCGACGCCATTTGTAACGGTGAACTCATCATCGGTGAGTCCGCATCCTCCTCCTCCCCTTCCGTCCCCGTCGTCGCTGCTCCGGGACGACGGGCTTCTGCAGGACGTGGTGCCATTGCAAATGAGGAAGGAGCCAAAAGATGAGCAAAATGGGTGA | 924 | 54.0 | MEKKKFEEFVGSENCAVSDSPMVFSDEFPGGGGIFDMSCESSDKGCSFDLLFGIHDYYNPSLFDLMSSVPPLLQQSPPLSSPASTVPESSEVLNAPPTPNSSSVSSSSGEELAKASEEAVEKNNSEKASKLLLKAKKKNQKRQREPRFAFMTKSDIDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSGDHSIVVTTYEGQHTHQSPVMPRRVMSESNSCLVADHNPTATTATGHLFHQPFMYNPTPFVTVNSSSVSPHPPPPLPSPSSLLRDDGLLQDVVPLQMRKEPKDEQNG | 307 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5334212 | 5336365 | + | MC05g0686 | Mch5g0780 | 688199 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0780 | 307 | Gene3D | WRKY domain | 146 | 212 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0780 | 307 | MobiDBLite | consensus disorder prediction | 114 | 128 | - | - | |
Mch5g0780 | 307 | FunFam | WRKY transcription factor 57 | 145 | 219 | - | - | |
Mch5g0780 | 307 | SMART | WRKY_cls | 159 | 218 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0780 | 307 | MobiDBLite | consensus disorder prediction | 74 | 128 | - | - | |
Mch5g0780 | 307 | MobiDBLite | consensus disorder prediction | 74 | 112 | - | - | |
Mch5g0780 | 307 | SUPERFAMILY | WRKY DNA-binding domain | 151 | 219 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0780 | 307 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 95 | 228 | IPR044810 | GO:0003700(InterPro) | |
Mch5g0780 | 307 | ProSiteProfiles | WRKY domain profile. | 154 | 219 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0780 | 307 | MobiDBLite | consensus disorder prediction | 264 | 307 | - | - | |
Mch5g0780 | 307 | Pfam | WRKY DNA -binding domain | 160 | 217 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0780 | Mch-Chr5:5334212 | Mch9g0642 | Mch-Chr9:4818780 | 1.83E-45 | dispersed | |
Mch5g0780 | Mch-Chr5:5334212 | Mch7g1247 | Mch-Chr7:15992564 | 6.69E-58 | wgd | |
Mch5g0780 | Mch-Chr5:5334212 | Mch8g1065 | Mch-Chr8:7514298 | 1.56E-17 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43368 | PF03106 | WRKY | 1.00E-25 | CL0274 | Mch | TF |
Pathway information
