Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0812 ATGAGAGTTGGGAAGTACGAGTTGGGGAAAACGCTCGGAGAAGGCAATTTCGGCAAGGTCAAGTTGGCCGCCGACGTCCGCTCCGGCCGCCGGTACGCCGTCAAGATCCTCGACAAGAACAAGATTCTCCATCTCAACTTCTCCGATCAGATTAAGCGGGAAATAAGCACGCTCAAGCTCCTCAAGCATCCGAACGTCGTCAGACTTTACGAGGTTTTGGCTAGTAAATCGAAGATTTACTTGGTTCTGGAGTGCGCCTCTGGCGGAGAACTGTTTGATAGAATCGAATCGAAAGGTAAGCTGGATGAAGCTGAAGGACGGAGACTCTTCCAGCAGCTTATCGATGGGCTCAGCTACTGCCATGACAAAGGAGTTTACCACAGAGATCTCAAGCTGGAAAACGTGCTTGTTGATGCTAAGGGAAACATTAAGATTTCTGATTTTGGCCTCAGTGCTTTACCACAGAATTGCAGGGAAGATGGTCTGTTGCACACCACCTGTGGAAGTCCCAACTATGTTGCACCAGAGGTGCTTGCTAATAGAGGATACGAAGGAGCCGCCTCGGATATATGGTCATGTGGGGTTATCTTGTATGTTATTCTGACGGCTTGTCTTCCTTTTGACGAGACCAATTTGGCTCTTCTTTACAAAAAGACTTTGAGGGGGGATTTTCAGATACCCAAATGGTTATCAGCAGGTGCCAGAAATTTGATAAGGAGAACTCTTGACCCCAATCCCAATACTCGGATTACAATGGCAGGAATTAAGGAGGATGAGTGGTTCAAGACCGAGTATAATCCTGCTTCTCCTTGTTATGATGATGAGGAGGGTCCATTCATTGATGAGGATGATGCCATCTCAACGCATGATGAGGTATATTTAGAGAGACAGAAATCTAGCTATATTTCTTCTCCCTTCTGCCCATCTGACGTGGAAAACAGTCCAAAGTCTCCCTCTACCATTAATGCGTTCGAGTTAATTGGAATGTCTTCAAGTTTGGATCTATCTGGCTTCTTTGAGAAAGAGGACGTTTCTGAGAGGAAGATCAGGTTTACATCCAACCATTCTGCCAAGGACTTGCTTGGGAGAATCGAGGTTATCGCAACTGATATGGGATTTCGAGTCCAAAAGAAAAGCGGAAAGTTGAAAGTGATGCAAGAGATGAGAAGTCAAAGAAGCCTAAGTAATCTCTCATTTGAAGCTGAGGTCTTTGAGATAAGCCCATTGCTTCAGGTGGTTGAACTGAAAAAATCTTTTGGAGAGTCATCAGCTTACAGACAGCTGTGTGAAAGGCTGGCAAACGATTTGGGCGCAAACCCGGAGCTCAAAGGGCATAGTCCAAGTTCATTCACATTGAACAGTACATGTTAG 1371 45.66 MRVGKYELGKTLGEGNFGKVKLAADVRSGRRYAVKILDKNKILHLNFSDQIKREISTLKLLKHPNVVRLYEVLASKSKIYLVLECASGGELFDRIESKGKLDEAEGRRLFQQLIDGLSYCHDKGVYHRDLKLENVLVDAKGNIKISDFGLSALPQNCREDGLLHTTCGSPNYVAPEVLANRGYEGAASDIWSCGVILYVILTACLPFDETNLALLYKKTLRGDFQIPKWLSAGARNLIRRTLDPNPNTRITMAGIKEDEWFKTEYNPASPCYDDEEGPFIDEDDAISTHDEVYLERQKSSYISSPFCPSDVENSPKSPSTINAFELIGMSSSLDLSGFFEKEDVSERKIRFTSNHSAKDLLGRIEVIATDMGFRVQKKSGKLKVMQEMRSQRSLSNLSFEAEVFEISPLLQVVELKKSFGESSAYRQLCERLANDLGANPELKGHSPSSFTLNSTC 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5661905 5666086 + MC05g0714 Mch5g0812 688231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0812 456 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0812 456 Pfam NAF domain 318 377 IPR004041 GO:0007165(InterPro)
Mch5g0812 456 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Mch5g0812 456 ProSiteProfiles NAF domain profile. 316 340 IPR018451 GO:0007165(InterPro)
Mch5g0812 456 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0812 456 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0812 456 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 390 438 IPR001772 -
Mch5g0812 456 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 426 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Mch5g0812 456 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Mch5g0812 456 FunFam Non-specific serine/threonine protein kinase 1 301 - -
Mch5g0812 456 SUPERFAMILY Protein kinase-like (PK-like) 3 294 IPR011009 -
Mch5g0812 456 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0812 456 FunFam Non-specific serine/threonine protein kinase 318 440 - -
Mch5g0812 456 CDD CIPK_C 322 432 - -
Mch5g0812 456 Gene3D Kinase associated domain 1, KA1 316 438 - -
Mch5g0812 456 FunFam Non-specific serine/threonine protein kinase 1 85 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0812 Mch-Chr5:5661905 Mch6g0715 Mch-Chr6:4914990 8.52E-126 dispersed
Mch5g0812 Mch-Chr5:5661905 Mch7g1274 Mch-Chr7:16206961 3.49E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77408 PF00069 Pkinase 3.90E-71 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0812 K07198 - csv:101205987 781.171