Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0840 ATGGATGACGATTTTGAGCTCCCATCTGCAAGCAATGTGGACGACGAAATGGGCATTCCGGGGGACGAAGCGGAGAGCGCGGTCCTGAAGGTTGGCGAAGAGAAGGAGATTGGAAAGAACGGGCTGAAGAAGAAACTTGTCAAAGAAGGTGAAGGATGGGAGACTCCCGACACTGGGGATGAAGTCGAAGTGCATTATACGGGAACCCTTCTTGATGGGACTCAGTTCGATTCTAGCCGTGACCGAGGAACGCCTTTCAAGTTCAAGCTCGGCGAAGGGCAAGTGATTAAGGGATGGGATGAAGGTATCAAAACCATGAAAAAGGGTGAAAATGCAGTTTTTACGATACCCCCTGAATTGGCCTATGGAGAGTCCGGCTCTCCTCCAACCATTCCACCAAACGCGACACTTCAATTTGATGTTGAGCTACTTTCATGGCACAGCGTCAAAGATATCTGTCAAGATGGAGGAATCTTAAAAAAGATCCTTGTTAAAGGAGACGGCTGGGACAAACCGAAGGATATAGACGAAGTTTTGGTTATCTATGAGGCTCGTCTTGAAGATGGTACATTGATCTCAAAGTCTGATGGGGTCGAATTTAATGTCGAAAAGGGATACTTGTGTCCTGCCTTGGCAACATCTGTGAAGACAATGAAGAAGGGAGAGAAAGTACTGTTGACTGTGAGGCCACGATATGCATTTGGAGAGTCTGGCAGGCCTGCAGCTGGAGAGGAAGGTGCTGTGCCTCCTAACGCCACTCTTAAGATAACCCTTGAGTTGGTTTCTTGGAAGGCTGTCATTGACATTACTAAGGATAAGAAGGTCCTGAAGAAGACCCTGAAGGAGGGAGAAGGATATGAGCAGCCAAATGATGGAGCAGTGGTTCAAGTTAAACTCACTGGTAAACTGGCCGATGGGACAATTTTTACTAAGAAGGGTGATGATGAGAAGCCTTTTGAGTTCAAAGTCGACGAAGAACAAGTCATTGAAGGTCTCGATTTAGCTTTGAAAAAGATGAAGAAAGGTGAAGTCGCCTTGGTGACCATCCATCCACAATATGCTTTTGGGTCTTCCGACTCATCTCAAGATCTAGCCGTGGTTCCTGCAAACTCAACTGTATATTACGAAGTTGAGCTGGTTTCATTCGTCAAAGAAAAGGAGTCTTGGGACCTCAACACACCAGAGAAAATTGAAGCAGCAGGGAAAAAGAAGGAAGAAGGAAATGCTTTGTTCAAAGCTGGAAAATATGACAGAGCGTCAAGGAGATATGAAAAGGCTGTTGGCTACATTGAATATGATACTTCTTTCAGCGATGAGGAGAAGCTACAGAGCAAGGCACTAAAAGTTTCATGCAACCTCAACAATGCTGCGTGCAAATTGAAAGTTAAAGACTACAAGCAAGCAGAGAAGCTCTGTACTAAGGTGTTGGAACTCGACAGTAGGAATGTGAAAGCTCTCTACAGAAGGGCTCAAGCATACATTCAACTTGTCGATCTAGATCTTGCCGAGCAGGATATCAAGAAAGCCCTCGAGATTGATCCAGATAACAGGGAAGTGAAAATGGAATACAGACAGCTGAAGGCGAAGGTGAAAGAGTACAACAAGAAAGATGCACAGTTTTACGGCAACATTTTTGCAAAAATGAACAAGTTGGAGCAGGCCAAGTCTGCTAACTCATCTGGAAATCAGGAGGCAGTGCCAATGACTATTGATGGCAAAGCTTGA 1725 45.22 MDDDFELPSASNVDDEMGIPGDEAESAVLKVGEEKEIGKNGLKKKLVKEGEGWETPDTGDEVEVHYTGTLLDGTQFDSSRDRGTPFKFKLGEGQVIKGWDEGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWHSVKDICQDGGILKKILVKGDGWDKPKDIDEVLVIYEARLEDGTLISKSDGVEFNVEKGYLCPALATSVKTMKKGEKVLLTVRPRYAFGESGRPAAGEEGAVPPNATLKITLELVSWKAVIDITKDKKVLKKTLKEGEGYEQPNDGAVVQVKLTGKLADGTIFTKKGDDEKPFEFKVDEEQVIEGLDLALKKMKKGEVALVTIHPQYAFGSSDSSQDLAVVPANSTVYYEVELVSFVKEKESWDLNTPEKIEAAGKKKEEGNALFKAGKYDRASRRYEKAVGYIEYDTSFSDEEKLQSKALKVSCNLNNAACKLKVKDYKQAEKLCTKVLELDSRNVKALYRRAQAYIQLVDLDLAEQDIKKALEIDPDNREVKMEYRQLKAKVKEYNKKDAQFYGNIFAKMNKLEQAKSANSSGNQEAVPMTIDGKA 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5907649 5911265 + MC05g0741 Mch5g0840 688259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0840 574 SMART tpr_5 400 433 IPR019734 GO:0005515(InterPro)
Mch5g0840 574 SMART tpr_5 449 482 IPR019734 GO:0005515(InterPro)
Mch5g0840 574 SMART tpr_5 483 516 IPR019734 GO:0005515(InterPro)
Mch5g0840 574 MobiDBLite consensus disorder prediction 1 21 - -
Mch5g0840 574 SUPERFAMILY FKBP-like 270 400 - -
Mch5g0840 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 175 264 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 SUPERFAMILY FKBP-like 23 158 - -
Mch5g0840 574 FunFam Peptidylprolyl isomerase 32 150 - -
Mch5g0840 574 SUPERFAMILY FKBP-like 151 264 - -
Mch5g0840 574 FunFam Peptidylprolyl isomerase 388 543 - -
Mch5g0840 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 292 383 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 59 147 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 MobiDBLite consensus disorder prediction 555 574 - -
Mch5g0840 574 Gene3D Tetratricopeptide repeat domain 389 543 IPR011990 GO:0005515(InterPro)
Mch5g0840 574 PANTHER PEPTIDYLPROLYL ISOMERASE 145 262 IPR050754 -
Mch5g0840 574 Coils Coil 516 536 - -
Mch5g0840 574 Gene3D - 151 264 IPR046357 GO:0003755(InterPro)
Mch5g0840 574 ProSiteProfiles TPR repeat profile. 483 516 IPR019734 GO:0005515(InterPro)
Mch5g0840 574 SUPERFAMILY TPR-like 395 549 IPR011990 GO:0005515(InterPro)
Mch5g0840 574 Gene3D - 265 388 IPR046357 GO:0003755(InterPro)
Mch5g0840 574 FunFam Peptidylprolyl isomerase 265 385 - -
Mch5g0840 574 Pfam Tetratricopeptide repeat 462 524 - -
Mch5g0840 574 Gene3D - 31 150 IPR046357 GO:0003755(InterPro)
Mch5g0840 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 286 380 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 170 261 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 53 144 IPR001179 GO:0003755(InterPro)
Mch5g0840 574 FunFam Peptidylprolyl isomerase 151 264 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0048 Mch-Chr2:378072 Mch5g0840 Mch-Chr5:5907649 1.92E-13 dispersed
Mch4g2562 Mch-Chr4:26102279 Mch5g0840 Mch-Chr5:5907649 2.34E-24 dispersed
Mch5g0840 Mch-Chr5:5907649 Mch7g0759 Mch-Chr7:12201063 5.10E-16 dispersed
Mch5g0840 Mch-Chr5:5907649 Mch10g0231 Mch-Chr10:1422007 2.15E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0840 K09571 - csv:101210041 1004.2