Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0843 | ATGGAGAGGGAATTCTTTATGAACGACGGATGCAACTTTTACGGGATGGAAATCCAACCCAATGAGCTGAATTCGAGTGGGTTGTTCAATAATGCGAATTGGGAAAATTCTATGGATCAGAGCGATCTATTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGTGAATTCCCACGCCGGCGGCGACAACGTGATGATGCGGGAATTGATCGGACGGCTTGGGAGCATTTGCAATTCTGGAGATATTTCGCCTCATTCTTACATTGGTGGAACCAACAACAACAGTACGAACACTTCTTGTTACAATACGCCTATGAATTCTCCACCGAAGCACAATTTGTCGCCGATCATGGAGTCGCAGATGAGAGGGAATTTGTCAGTGGGGGGCAATTTGGTTCCCCATCAGAATCTGGCGCCGTTCTCGGCCGACCCAGGGTTTGCCGAGAGGGCGGCGAGGTTTTCTTGCTTCGGAAGTAGGAATCTCGGGAGCTTGAATGGGCAATTTAGTTCAAACGAAACTCAAGAATTGGGTAACAGATCAGTGCCCGGAGGTGGAGTGGAATCTGGAAAGCTCTCCAGAGTTTCAAGTAACAAATCCTTCAACATTGCTGGAATTGGATCTCAAATGGGAGTTGTTCAGGAGGGCAACCAAAGCCCAATGCAGAAGGGGAATTCAATGCCTAACAAGAAGCTGAACAGGTTTTCGAGGTCTTCGACGCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCGGTTTCCGAGCAGATTACTGCCAGGGAGTTGGGCTTCAAAGGTAAAGCTGAAGCCAACACTAGAAAAAGGAAATCAGTTCACACTGGGGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATCAACTGGGAAGAAAATCAAACCAGAGGAAGTTTCCAAGAAAGAGATGGATGCTGCTAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAACTTCAGGGGATGCAAATCAGAAGCAAACCAATGATAATTCAAAGCCTCCAGAACCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGCCATAGTTTGGCTGAAAGAGTACGGCGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTACAGTCCTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGTCAACTGTCAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAATGTCCTGGTTCGGCGCCCCATACGGTTTACCCTTCGGATTCATCAATGCCCACATTCACATATGAATATCAATCTATGCATATGCCTCCTCTTCACAGTGCCATTTCTAATGGCACAGAGAAGCAATTCTCAGTTGCCTCAGCAAGTGATGCGATGCAAAGAAATCTAAGCGGGCAGGTTCCAAGCGGGTACAGCGAAGTCGGGAATGGAATCCAAATTTCAAAGTTTTGGGAGGATGAGCTCCACACTGTAGTTCAGATGGGTTATGGACAGAACCAGGTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAA | 1632 | 46.2 | MEREFFMNDGCNFYGMEIQPNELNSSGLFNNANWENSMDQSDLFESTLSSIVSSPVNSHAGGDNVMMRELIGRLGSICNSGDISPHSYIGGTNNNSTNTSCYNTPMNSPPKHNLSPIMESQMRGNLSVGGNLVPHQNLAPFSADPGFAERAARFSCFGSRNLGSLNGQFSSNETQELGNRSVPGGGVESGKLSRVSSNKSFNIAGIGSQMGVVQEGNQSPMQKGNSMPNKKLNRFSRSSTPENAGDSREGSSVSEQITARELGFKGKAEANTRKRKSVHTGEAKDVKAAGENHESTGKKIKPEEVSKKEMDAAKGKAEAKDGTKTSGDANQKQTNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPRMDFNMETLLPKDIFKCPGSAPHTVYPSDSSMPTFTYEYQSMHMPPLHSAISNGTEKQFSVASASDAMQRNLSGQVPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQVQNANDEMKSEL | 543 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 5925941 | 5929166 | - | MC05g0743 | Mch5g0843 | 688262 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0843 | 543 | Pfam | Helix-loop-helix DNA-binding domain | 360 | 407 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0843 | 543 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 139 | 486 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Mch5g0843 | 543 | MobiDBLite | consensus disorder prediction | 215 | 258 | - | - | |
Mch5g0843 | 543 | FunFam | Basic helix-loop-helix transcription factor | 353 | 426 | - | - | |
Mch5g0843 | 543 | MobiDBLite | consensus disorder prediction | 169 | 193 | - | - | |
Mch5g0843 | 543 | Gene3D | - | 353 | 427 | IPR036638 | GO:0046983(InterPro) | |
Mch5g0843 | 543 | CDD | bHLH_AtBPE_like | 346 | 431 | - | - | |
Mch5g0843 | 543 | MobiDBLite | consensus disorder prediction | 266 | 325 | - | - | |
Mch5g0843 | 543 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 354 | 426 | IPR036638 | GO:0046983(InterPro) | |
Mch5g0843 | 543 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 356 | 406 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0843 | 543 | MobiDBLite | consensus disorder prediction | 326 | 340 | - | - | |
Mch5g0843 | 543 | SMART | finulus | 362 | 412 | IPR011598 | GO:0046983(InterPro) | |
Mch5g0843 | 543 | MobiDBLite | consensus disorder prediction | 215 | 347 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0843 | Mch-Chr5:5925941 | Mch9g1063 | Mch-Chr9:9814014 | 2.14E-74 | dispersed | |
Mch5g0843 | Mch-Chr5:5925941 | Mch4g1534 | Mch-Chr4:18722502 | 8.60E-52 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43372 | PF00010 | HLH | 1.20E-05 | No_clan | Mch | TF |
Pathway information
