Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0843 ATGGAGAGGGAATTCTTTATGAACGACGGATGCAACTTTTACGGGATGGAAATCCAACCCAATGAGCTGAATTCGAGTGGGTTGTTCAATAATGCGAATTGGGAAAATTCTATGGATCAGAGCGATCTATTTGAGTCTACTTTGAGCTCGATTGTGTCTTCTCCGGTGAATTCCCACGCCGGCGGCGACAACGTGATGATGCGGGAATTGATCGGACGGCTTGGGAGCATTTGCAATTCTGGAGATATTTCGCCTCATTCTTACATTGGTGGAACCAACAACAACAGTACGAACACTTCTTGTTACAATACGCCTATGAATTCTCCACCGAAGCACAATTTGTCGCCGATCATGGAGTCGCAGATGAGAGGGAATTTGTCAGTGGGGGGCAATTTGGTTCCCCATCAGAATCTGGCGCCGTTCTCGGCCGACCCAGGGTTTGCCGAGAGGGCGGCGAGGTTTTCTTGCTTCGGAAGTAGGAATCTCGGGAGCTTGAATGGGCAATTTAGTTCAAACGAAACTCAAGAATTGGGTAACAGATCAGTGCCCGGAGGTGGAGTGGAATCTGGAAAGCTCTCCAGAGTTTCAAGTAACAAATCCTTCAACATTGCTGGAATTGGATCTCAAATGGGAGTTGTTCAGGAGGGCAACCAAAGCCCAATGCAGAAGGGGAATTCAATGCCTAACAAGAAGCTGAACAGGTTTTCGAGGTCTTCGACGCCCGAAAATGCTGGTGATTCGCGGGAGGGATCTTCGGTTTCCGAGCAGATTACTGCCAGGGAGTTGGGCTTCAAAGGTAAAGCTGAAGCCAACACTAGAAAAAGGAAATCAGTTCACACTGGGGAAGCAAAAGATGTGAAGGCTGCAGGAGAGAACCATGAATCAACTGGGAAGAAAATCAAACCAGAGGAAGTTTCCAAGAAAGAGATGGATGCTGCTAAGGGGAAGGCAGAGGCAAAAGATGGCACAAAAACTTCAGGGGATGCAAATCAGAAGCAAACCAATGATAATTCAAAGCCTCCAGAACCTCCAAAGGATTATATCCATGTCAGAGCTAGAAGGGGTCAAGCTACAGATAGCCATAGTTTGGCTGAAAGAGTACGGCGAGAGAAAATCAGCAAACGGATGAAGTTTCTTCAAGATCTCGTCCCCGGTTGCAATAAGGTAACTGGGAAGGCAGTCATGCTTGATGAAATCATAAACTATGTACAGTCCTTGCAGCGCCAAGTTGAGTTTCTTTCAATGAAATTGTCAACTGTCAATCCAAGGATGGATTTTAACATGGAGACCCTTTTGCCAAAGGATATCTTCAAATGTCCTGGTTCGGCGCCCCATACGGTTTACCCTTCGGATTCATCAATGCCCACATTCACATATGAATATCAATCTATGCATATGCCTCCTCTTCACAGTGCCATTTCTAATGGCACAGAGAAGCAATTCTCAGTTGCCTCAGCAAGTGATGCGATGCAAAGAAATCTAAGCGGGCAGGTTCCAAGCGGGTACAGCGAAGTCGGGAATGGAATCCAAATTTCAAAGTTTTGGGAGGATGAGCTCCACACTGTAGTTCAGATGGGTTATGGACAGAACCAGGTGCAGAATGCTAATGATGAGATGAAAAGTGAATTGTAA 1632 46.2 MEREFFMNDGCNFYGMEIQPNELNSSGLFNNANWENSMDQSDLFESTLSSIVSSPVNSHAGGDNVMMRELIGRLGSICNSGDISPHSYIGGTNNNSTNTSCYNTPMNSPPKHNLSPIMESQMRGNLSVGGNLVPHQNLAPFSADPGFAERAARFSCFGSRNLGSLNGQFSSNETQELGNRSVPGGGVESGKLSRVSSNKSFNIAGIGSQMGVVQEGNQSPMQKGNSMPNKKLNRFSRSSTPENAGDSREGSSVSEQITARELGFKGKAEANTRKRKSVHTGEAKDVKAAGENHESTGKKIKPEEVSKKEMDAAKGKAEAKDGTKTSGDANQKQTNDNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISKRMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLSTVNPRMDFNMETLLPKDIFKCPGSAPHTVYPSDSSMPTFTYEYQSMHMPPLHSAISNGTEKQFSVASASDAMQRNLSGQVPSGYSEVGNGIQISKFWEDELHTVVQMGYGQNQVQNANDEMKSEL 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5925941 5929166 - MC05g0743 Mch5g0843 688262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0843 543 Pfam Helix-loop-helix DNA-binding domain 360 407 IPR011598 GO:0046983(InterPro)
Mch5g0843 543 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 139 486 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Mch5g0843 543 MobiDBLite consensus disorder prediction 215 258 - -
Mch5g0843 543 FunFam Basic helix-loop-helix transcription factor 353 426 - -
Mch5g0843 543 MobiDBLite consensus disorder prediction 169 193 - -
Mch5g0843 543 Gene3D - 353 427 IPR036638 GO:0046983(InterPro)
Mch5g0843 543 CDD bHLH_AtBPE_like 346 431 - -
Mch5g0843 543 MobiDBLite consensus disorder prediction 266 325 - -
Mch5g0843 543 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 354 426 IPR036638 GO:0046983(InterPro)
Mch5g0843 543 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 356 406 IPR011598 GO:0046983(InterPro)
Mch5g0843 543 MobiDBLite consensus disorder prediction 326 340 - -
Mch5g0843 543 SMART finulus 362 412 IPR011598 GO:0046983(InterPro)
Mch5g0843 543 MobiDBLite consensus disorder prediction 215 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0843 Mch-Chr5:5925941 Mch9g1063 Mch-Chr9:9814014 2.14E-74 dispersed
Mch5g0843 Mch-Chr5:5925941 Mch4g1534 Mch-Chr4:18722502 8.60E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43372 PF00010 HLH 1.20E-05 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0843 - - - 0.0