Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0852 ATGGACAAGGAGATACCGCAAAGCCATGCAGGGGGATTTCTGCCCCCAAGTTTTTACTCGGGTATTTCACCAAATGGGGGCAGTTTCAATGGAAAATCTGAAACAGACTTATCTTCAATGTCGTTACCTCCAATGGCTCCGAATGCTAATTCTGATTCGGGTCATCGATTTAGCCATGATATTAGTAGGATGCCTGACAATCCGCCGAGAAATATTGGTCATAGACGTGCGCATTCAGAAATCCTGACTCTTCCTGATGATATTTACTTCGACAGTGACCTTGGTATCATTGGTGGTAGTGCTGGGCCTTCTCTTTCTGATGATACTGAGGAAGATTTGTTGTCCATGTACCTTGACATGGATAAATTGAATTCGTCATCTGCTACGTCTGCAATTCCAATGGGCGAGTCATCTACCGCTATTGCAGAAGTGGCAGTAACACATGCCTCGGCAACTGGGTCAGCAACATCTGTGGATGATTCTGCTGTTGGTTTGAAGGAGAGGCCGAGGGTCAGGCACCAGCATAGCCAATCCATGGACGGCTTGTCAACCATCAAACCTGAGATGCTTGTCTCGGGGTCTGAAGAAGTCTCTGCAGCTGATACCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAGCTTGCGCTGATTGACCCCAAACGTGCAAAGAGGATTTGGGCAAATAGACAGTCAGCTGCTAGGTCAAAGGAAAGAAAGATGCGGTACATCGGCGAGCTTGAGCGGAAGGTTCAGACTCTGCAAACAGAGGCAACTTCTTTGTCTGCTCAGTTAACACTCTTACAGAGAGATACAAATGGTCTCGCTGCTGAGAACAGTGAAATGAAGTTGCGGTTGCAAACAATGGAGCAGCAGGTTCACCTGCAAGATGGAGATCATGCTGTTACACTTTTAACTGTTGCATCTGCACCTGTTATAGCCCTCACAATTTTGGATGTTATTGAGAATCACTTCTACTTCATGGACTATTAA 990 46.16 MDKEIPQSHAGGFLPPSFYSGISPNGGSFNGKSETDLSSMSLPPMAPNANSDSGHRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDIYFDSDLGIIGGSAGPSLSDDTEEDLLSMYLDMDKLNSSSATSAIPMGESSTAIAEVAVTHASATGSATSVDDSAVGLKERPRVRHQHSQSMDGLSTIKPEMLVSGSEEVSAADTKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIGELERKVQTLQTEATSLSAQLTLLQRDTNGLAAENSEMKLRLQTMEQQVHLQDGDHAVTLLTVASAPVIALTILDVIENHFYFMDY 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6022769 6025729 - MC05g_new0103 Mch5g0852 688271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0852 329 CDD bZIP_plant_RF2 221 270 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0852 329 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 58 297 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch5g0852 329 SMART brlzneu 216 280 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0852 329 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 218 281 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0852 329 Coils Coil 236 270 - -
Mch5g0852 329 MobiDBLite consensus disorder prediction 23 72 - -
Mch5g0852 329 MobiDBLite consensus disorder prediction 23 55 - -
Mch5g0852 329 Pfam bZIP transcription factor 220 274 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0852 329 FunFam probable transcription factor PosF21 219 272 - -
Mch5g0852 329 MobiDBLite consensus disorder prediction 157 180 - -
Mch5g0852 329 Gene3D - 219 272 - -
Mch5g0852 329 MobiDBLite consensus disorder prediction 56 72 - -
Mch5g0852 329 SUPERFAMILY Leucine zipper domain 220 271 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0852 Mch-Chr5:6022769 Mch9g1386 Mch-Chr9:16236536 5.17E-43 dispersed
Mch5g0851 Mch-Chr5:6015513 Mch5g0852 Mch-Chr5:6022769 1.55E-139 tandem
Mch5g0852 Mch-Chr5:6022769 Mch5g0853 Mch-Chr5:6027882 5.43E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43374 PF00170 bZIP_1 8.20E-09 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0852 - - - 0.0