Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0853 ATGGAGAAGGATAAACCCCAAAGCCATTCTGGAGGATTTCTGCCCCCATCGAGTCGTTACTCGGGTCTTTCACCAACTGGGAGTAGTTTCAATGGAAAATCTGAGGCAGCTACCTCTTCAATGTCGTTCCCTCCAATGGCTCCGAGTGCTAATTCCGATTCGGGTCAATTTGGTCGTGGAATGTCCAGCGATTCCAATCGGTTCAGCCATGATATCAGTCGGATGCCTGATAACCCACCGAGAAATATTGGTCACAGACGTGCCCATTCAGAAATATTGACACTTCCCGATGATATTTGCTTTGACAGTGACCTTGGTGTCGTTGGCGGTGCTGATGGGCCTTCTTTTTCTGATGATACTGAGGAAGATTTGTTTTCCATGTACCTTGACATGGATAAATTCAATTCTTCCACTGCTACCTCTGCAGTACAAGTCGGGGAGTCATCCTCCGGTGTTGTAGAAGCGAGATCAACACATGCTTCAGGAATTGGAGCAGCAACTTCTAAAGATGATGCCTCTGTTGGTTTGAAGGAGAGGCCGAGAGTCAGGCACCAGCACAGCCAGTCCATGGATGGCTTGACAACCATCAAACCTGAGATGCTTGTCTCAGGGTCTGAAGAAGTATCTGCAGCTGATGCCAAGAAAGCCATGTCAGCTACAAAGCTTGCTGAACTTGCTCTAATAGACCCCAAACGAGCAAAGAGGATATGGGCAAATAGACAGTCAGCTGCTAGGTCGAAGGAAAGAAAGATGCGGTACATTGCTGAGCTTGAACGGAAAGTTCAGACTCTGCAAACAGAGGCAACTTCTTTATCTGCTCAGTTAACCCTGTTACAGAGAGACACGAATGGTCTTTCTGCTGAGAACAGCGAACTAAAGTTGCGGTTGCAGACAATGGAGCAGCAGGTTCACCTGCAAGATGCTTTAAATGAAGCTCTGAAAGAGGAAATCCAGCATTTGAAAGTATTGACTGGCCAACCAATCCCAAATGGTGGATCAATGACAAGCTTTGCTTCATATGGAACTAGCCAACAACAACAATTCTACCAAAACAATCAAGCAGTACACACTTTGTTAACTGCTCAACAGTTTCAGCAACTTCAAATCCACTCACAGCAGCAGCAGCAGCAGAATTTTCAGTATCATCAGCTGCATCAGCTTCAGCAGCAACCGACCGGAGACATAAAAATGAAAGGGTCGGTTTCTTCTCCGAGCCTGAAAGACAACAACACATCAGATACGTCCTCTACCGCTTGT 1257 46.38 MEKDKPQSHSGGFLPPSSRYSGLSPTGSSFNGKSEAATSSMSFPPMAPSANSDSGQFGRGMSSDSNRFSHDISRMPDNPPRNIGHRRAHSEILTLPDDICFDSDLGVVGGADGPSFSDDTEEDLFSMYLDMDKFNSSTATSAVQVGESSSGVVEARSTHASGIGAATSKDDASVGLKERPRVRHQHSQSMDGLTTIKPEMLVSGSEEVSAADAKKAMSATKLAELALIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQPIPNGGSMTSFASYGTSQQQQFYQNNQAVHTLLTAQQFQQLQIHSQQQQQQNFQYHQLHQLQQQPTGDIKMKGSVSSPSLKDNNTSDTSSTAC 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6027882 6032819 - MC05g0750 Mch5g0853 688272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0853 419 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 229 292 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0853 419 MobiDBLite consensus disorder prediction 1 85 - -
Mch5g0853 419 MobiDBLite consensus disorder prediction 11 69 - -
Mch5g0853 419 MobiDBLite consensus disorder prediction 172 186 - -
Mch5g0853 419 Gene3D - 230 283 - -
Mch5g0853 419 SMART brlzneu 227 291 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0853 419 MobiDBLite consensus disorder prediction 388 419 - -
Mch5g0853 419 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 69 391 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch5g0853 419 FunFam probable transcription factor PosF21 230 283 - -
Mch5g0853 419 MobiDBLite consensus disorder prediction 158 189 - -
Mch5g0853 419 Pfam bZIP transcription factor 231 285 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0853 419 CDD bZIP_plant_RF2 232 281 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g0853 419 Coils Coil 247 316 - -
Mch5g0853 419 SUPERFAMILY Leucine zipper domain 231 282 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1880 Mch-Chr4:21473069 Mch5g0853 Mch-Chr5:6027882 4.41E-50 dispersed
Mch5g0851 Mch-Chr5:6015513 Mch5g0853 Mch-Chr5:6027882 8.64E-197 dispersed
Mch5g0853 Mch-Chr5:6027882 Mch9g1386 Mch-Chr9:16236536 1.11E-51 dispersed
Mch5g0852 Mch-Chr5:6022769 Mch5g0853 Mch-Chr5:6027882 5.43E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43375 PF00170 bZIP_1 1.20E-08 CL0018 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0853 - - - 0.0