Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0863 ATGTACCAATCAACCTCTTCCTCTTCATCTTCTCAGAAATCCATGGGCCCCGCCGGAGGAGGCGGCGGTGGAGGCCTTACTCGCTACGGCTCCGCCCCTGGCTCTCTCCTGACCTCGGCCGTGGACTCTGTAATCGGCGGAGGGCGCCATCCGGACTCCACCGCGTCCCTCCGTACGCCGCCGCCGTCGTTCGGCGGCCATTACTTCTCCTCCGCCGACTCCTCCACATCCAACGATCTCAAATCCTCCTCCTCCGGGGCCGCCGCCGCCGCTGCCCTGAATCGCTCCTACGGAATCCACGATTTAGCCCTAGGCGATTTCTCGATACCGAGAAATTTCAATAGCAATGGCGGCCAATCGTCTTCCTCCTCGCCGTTGGTTCGCCAGAGAAGCTCGCCGGCGGGATTTCTAGGCCACTTCGCCGTCGCCGATGGAAACGGATCAGGGTTTTCAGTGACAAGGGGAGGTGGGAACTATGGTTCACAAAATAATAACAATGGAGTTTGCAGGCTTAAGTCTCAGCTGAGCTTCAGTGGGCAGGATTCTCTGTCTCAGATATCAGAAATGAGTGAGAGTGTGGTGGAGGGAGTCAACTCGAGCAATGCCAATGCCAATATCGCCATCACCCATTCCTTCGGAATCGACTCTTGGGACAGCGCCAACTCCAACTCCATTGTTTTCACTGCCCCTCACCCCAAACGCCCCCACCATTCTGATTCCGACTTCTTCAATTGCCTCGAGTCTCAGTTTAGCATGCCACAGACAAGCCTAGAAATGGCAACTGTGGAGAGGCTGCTCCAAATTCCAGAGGACTCTGTTCCTTGTAAGATCCGAGCCAAGCGTGGCTGTGCCACTCATCCTCGCAGCATTGCTGAAAGGGAGAGAAGAACTAGAATCAGTGGAAAATTGAAGAAACTTCAAGAGCTTGTCCCCAACATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCAGTGCAGCACATCAAGGGCCTTCAAAATCAGATTCAGAAGCTTAACAAAGAAGTTGAAAATTGTAGCTGTGGATGCAAAGGATCCTCATAA 1068 53.65 MYQSTSSSSSSQKSMGPAGGGGGGGLTRYGSAPGSLLTSAVDSVIGGGRHPDSTASLRTPPPSFGGHYFSSADSSTSNDLKSSSSGAAAAAALNRSYGIHDLALGDFSIPRNFNSNGGQSSSSSPLVRQRSSPAGFLGHFAVADGNGSGFSVTRGGGNYGSQNNNNGVCRLKSQLSFSGQDSLSQISEMSESVVEGVNSSNANANIAITHSFGIDSWDSANSNSIVFTAPHPKRPHHSDSDFFNCLESQFSMPQTSLEMATVERLLQIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVQHIKGLQNQIQKLNKEVENCSCGCKGSS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6216739 6222826 + MC05g0759 Mch5g0863 688282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0863 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 348 IPR036638 GO:0046983(InterPro)
Mch5g0863 355 Coils Coil 323 350 - -
Mch5g0863 355 Gene3D - 284 351 IPR036638 GO:0046983(InterPro)
Mch5g0863 355 Pfam Helix-loop-helix DNA-binding domain 289 334 IPR011598 GO:0046983(InterPro)
Mch5g0863 355 MobiDBLite consensus disorder prediction 1 16 - -
Mch5g0863 355 SMART finulus 289 339 IPR011598 GO:0046983(InterPro)
Mch5g0863 355 MobiDBLite consensus disorder prediction 68 83 - -
Mch5g0863 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 283 333 IPR011598 GO:0046983(InterPro)
Mch5g0863 355 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 98 342 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Mch5g0863 355 MobiDBLite consensus disorder prediction 1 83 - -
Mch5g0863 355 FunFam Transcription factor bHLH130 family 284 352 - -
Mch5g0863 355 CDD bHLH_AtbHLH_like 288 340 IPR045239 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0863 Mch-Chr5:6216739 Mch6g1134 Mch-Chr6:8509112 8.10E-38 dispersed
Mch5g0863 Mch-Chr5:6216739 Mch5g1414 Mch-Chr5:15229575 4.14E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43376 PF00010 HLH 4.90E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0863 - - - 0.0