Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0899 ATGATAGAAATGAAGCTATCCTCTGCACATTATTACACTCTCCCTTTAATCCTCTTTCTCTCCCTCTTCCATCAAAATTCCCTTTGCCAACAGTCATATCTCGGAGCTGAAGACTGCTCCACCACCAATTCTTCTTCCATATCCAGAGGCTACGTCTGCAACGCCCATTACAACTCCTGCCAATCCTTTCTCACCTTCAGATCCCGGCCGCCCAACTATGGCACCGCCGCCGAAATAGCCCGCCTCCTCGACTCCCGACCGACCGACATAATATCTCTAAACAAACTCCCCTCGTCCGACCACCAAATATCCAACGACAGCCTCGTCATCGTACCGGTTTTGTGTTCGTGTTCCGGCAGCATCTACCAACACAACACGCGCTACACCATCAAGCGCGGAGATGACTACACAGTGGTGGCGCGGGATATCTATCAGGGGCTGACCACTTGTCAGGCACTGATCGGCCAGAATTATTACGACGAGTGGAGCCTTGCGATCGGGAGCGAGCTGTTGGTGCCAGTGAGATGCGCCTGCCCGACCGCAGTGCAGGAGGCCGGCGGGGTGACATCGCTGCTGGTTTATATGGTGGAGAGTGGGGATAGTTTCGCATCCATTGGAGGGGAGTTTGGAGTCGATGAAAGAAGCATTTTGGAAGCCAATAAGCTTAACGACTCCAGTCGGATTTACCCTTCTAAACCCATTTTGGTTCCTTTGAGGAATGAGACTTGTGGAGTGAATTCTTTGTTTTACTTCTGCTCCAACGATGGCCATGTTTTGGATGGAGGGGATGATCCAAGATCAAAGCTTCCACAATCCTTGGTAACTGCAATAGAGACGGAGTTTCCTTTACTAGTATGCGAATTTGTTCCAAACAGGACGCTTTCGGACCATATCCACGAGCAAGGTTGTGAAGATTCTTCTTCTCTTTCATGGGAGGTTCGTCTCAAAATTGCCTCTGAAGTTGCTGGAGCTATAGCTTACCTACATTCTGCAGCTTCTATACCTATTTTCCATCGAGATATCAAGTCTTCAAATATACTCTTGGATCATAGCTACAGTGCGAAAGTATCCGATTTCGGGACATCAAGATTCGTACCCTACGATCAATCTCATTTAACTACAAAAGTTCAAGGAACATTTGGCTACATTGATCCTGAGTATTTTCGATCAAGCCAATTAACTGAAAAGAGTGATGTTTACAGTTTTGGAGTTCTAATGGTAGAGCTTTTAACGGGAAAACAACCGTTCTCTTTTGCAAAAGATAAGGGCAAGAATCTACTAGAGTACTTCATTTCGTTGGAGACAAATAATCGACTTGATGAAATTCTAGATGTTTTAGTAGAAAGAGAGGCAAAGATAGAGGATGTTTATTGTGTTGCAAAGCTAGCCATTAGATGTTTGAGATTGAATGGGAAGAAAAGGCCTACCATGAAACAAGTATTTTTGGAATTAGAAGGAGTGAGGAAGCCCCAAGATTTAAATCAATCAAGTGAGAGTTTGACTATTCACAGTGCTAGTTGTAGCGATGAAGAGTTTATGGGTGACAGTATTGTATCTCTTGAAATTGAGACATTGTAA 1578 44.93 MIEMKLSSAHYYTLPLILFLSLFHQNSLCQQSYLGAEDCSTTNSSSISRGYVCNAHYNSCQSFLTFRSRPPNYGTAAEIARLLDSRPTDIISLNKLPSSDHQISNDSLVIVPVLCSCSGSIYQHNTRYTIKRGDDYTVVARDIYQGLTTCQALIGQNYYDEWSLAIGSELLVPVRCACPTAVQEAGGVTSLLVYMVESGDSFASIGGEFGVDERSILEANKLNDSSRIYPSKPILVPLRNETCGVNSLFYFCSNDGHVLDGGDDPRSKLPQSLVTAIETEFPLLVCEFVPNRTLSDHIHEQGCEDSSSLSWEVRLKIASEVAGAIAYLHSAASIPIFHRDIKSSNILLDHSYSAKVSDFGTSRFVPYDQSHLTTKVQGTFGYIDPEYFRSSQLTEKSDVYSFGVLMVELLTGKQPFSFAKDKGKNLLEYFISLETNNRLDEILDVLVEREAKIEDVYCVAKLAIRCLRLNGKKRPTMKQVFLELEGVRKPQDLNQSSESLTIHSASCSDEEFMGDSIVSLEIETL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6622573 6625555 + MC05g_new0110 Mch5g0899 688318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0899 525 SMART LysM_2 193 237 IPR018392 -
Mch5g0899 525 ProSiteProfiles LysM domain profile. 192 236 IPR018392 -
Mch5g0899 525 Pfam LysM domain 194 237 IPR018392 -
Mch5g0899 525 CDD LysM 193 230 IPR018392 -
Mch5g0899 525 FunFam Wall-associated receptor kinase 2 289 506 - -
Mch5g0899 525 Gene3D LysM domain 188 244 IPR036779 -
Mch5g0899 525 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g0899 525 SUPERFAMILY Protein kinase-like (PK-like) 278 501 IPR011009 -
Mch5g0899 525 Pfam Protein kinase domain 283 480 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0899 525 SMART serkin_6 235 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0899 525 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 16 242 IPR052611 -
Mch5g0899 525 SUPERFAMILY LysM domain 192 237 IPR036779 -
Mch5g0899 525 ProSiteProfiles Protein kinase domain profile. 179 487 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0899 525 Gene3D Transferase(Phosphotransferase) domain 1 289 510 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0899 Mch-Chr5:6622573 Mch6g1488 Mch-Chr6:14274369 2.57E-173 dispersed
Mch5g0899 Mch-Chr5:6622573 Mch1g1165 Mch-Chr1:14092234 7.59E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77409 PF00069 Pkinase 4.80E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0899 - - - 0.0