Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0924 ATGGGTTTCCTCAGATTTCTGCTTCTTCCCCTTCTGGGATTCATGGCGCTTCTTCTCCCCTGCTGCTGCATTGCCGGAAATGGCGTTTCCCCCCAACTCAACGACGACATTCTCGGCCTCATAGTCTTCAAATCCGACCTCCACGACCCCTCTTCCTCTCTCGCCTCCTGGAATGAGGATGACGAATCCCCATGTTCCTGGCGCTTCGTTAAATGCAACCCTGTTAGTGGCAGAGTTTCCGAAGTTTCGATCGATGGATTGGGGTTGGCTGGGAGAATCGGGAGAGGGCTGGAGAAATTGCAGCATCTCAAGGTATTGTCACTCTCTAACAATAATTTCACCTCCAATCTCAGCCCTGAGCTTGTTCTTCCCGCGAGTCTTGAGAGAGTTAATTTCAGTCGCAATGGTCTCTCTGGCCGGATACCCAGTTCTGTAATCGCCATGTCCTCCGTTAGATTTCTTGATTTTTCTGATAATCTCTTCTCTGGGCCTCTTTCTGATGAAATGTTTATCAACTGCTCGTCGCTTCATTTTGTCTCGTTTGCATCTAATTTGCTTGAAGGCCCTGTCCCCAAGACGTTACTCACAAGGTGTTTGTATTTAAACACTCTGAATCTCTCCACCAATCGGTTCTCCGGTAGCTTGGATTTTGCTCCGGGGATTTGGTCCTTGACAAGGCTCCGAACTCTGGATCTTTCAAATAATGCCCTCTCTGGATATTTCCCACAAGGAATCTCAGCCATTCATAACTTAAAAGAGCTCAAGCTGCAGAGCAACCAGTTTTCAGGGCCATTGCCTTCAGATTTAGGACTATGCCCCCACTTGGGCTCATTAGACGTCAGCCGAAACCGCCTCGCCGGACCGCTACCGGAGTCGATGAGGCTCCTAACTTCCTTGACCTTCTTGGACATAGGATTCAACACGTTCTCCGGGGAGTTTCCACAGTGGATTGGGAACATGACCAGTTTGGAGTACGTGGATTTCTACAGCAATGGCTTCACTGGGAGCCTCCCTCTGGAAATGGGTGGCCTGAGATCTGTCAAATTCATGAGTTTCTCAAACAACAAGCTATCCGGGAACATCCCAAAGTCATTGATGGACTGTTCAAAGCTTTCTGTGATCAAGCTTGGAGGAAACAGCTTCAATGGCGGGCTGCCTGAGGGGCTGTTTGAACTGGGTTTGGAGGAGATTGATTTTTCTCACAACGAGCTCACTGGATCAATCCCATCAGGATCAAGTAGGCTGTATGAGAGTCTTACAAGGTTGGATTTGTCTAGGAACAATTTGAAAGGGAATTTTCCTGCAGAAATGGGGTTGTATAAGAATTTGAGGTACTTGAATCTGTCATTGAACAATTTGCAGGCAAAGATTCCACCAGAAATGGGGTTTTTTCAGAACTTGAGTGTGTTGGACCTCAGAAGCAGTGCTGTGTATGGTGAAATCCCTGGAGACTTGTGTGATTCTGGGAGTTTGGGGATTCTTCAGCTTGATGGGAACTCGTTGAGTGGCCCAATTCCTGATCAGATTGGGAACTGTCTCTCACTTTACTTGCTGAGTTTGTCCCACAACAATCTTAGTGGATCAATTCCAAAGTCAATCTCCAAGCTAAGCAAATTAGAAATTCTAAGACTAGAATCAAATGAACTAAGTGGAGAAATACCCCAAGAACTTGGAGTTCTTCAAAATCTTCTTGCTGTTAACATTTCTTACAATAGGCTCACAGGCAGGCTCCCAGTTGGTGGCATTTTCCCAAGCTTGGACCAAAGTGCTTTGCAAGGTAACTTGGGAATCTGCTCCCCTTTGCTTAAGGGACCTTGTAAAATGAATGTCCCTAAGCCCCTTGTTCTTGACCCCAATGCCTATCCCACACAAATGGGTCCCCAAAGCAGCAGAAACAAGCCCTCTGAATACTCTAAGCCTTCCCACCATGTGTTCTTCAGTGTCTCTGCCGTTGTTGCCATTTCTGCTGCCACTTTGATTGCCATTGGGGTTCTTGTGATCACCTTGCTGAATGTCTCGGCTCGGAGGAGATCGCTTGCGTTTGTCGACAATGCCCTGGAGAGTATGTGCTCTAGCTCTTCGAAATCGGGGACTGTGGCGGCTGGAAAGCTTATCTTGTTTGATTCGAGTTCGAGGGGGTCCCCAAACTGGGTTAGTAACCATGAAGAGTTGCTCAATAAGGCTTCGGAGATTGGTGGGGGAGTTTTCGGAACGGTTTATAAGGTTTCATTGGGGGGAGATGGAGGAGGAGGGAGAGTTGTGGCTATCAAGAAGCTTGTGAAATCAAACATGATCCAGAACCTGGAAGATTTCGACCGGGAAATTCGAATTTTGGGGAAGGTCAAGCACCCGAATCTGATCAGCTTGAAGGGTTACTACTGGACTACTCAAACTCAGCTGTTGGTGATGGAGTATGCTCCCAATGGAAGTCTTCAAACTCAACTCCATGGAAGGCTTCCTTCAACTCCACCACTGTCTTGGGAAAACAGGTTCAAGATTGTGCTTGGGACAGCCAAAGGACTTGCACATCTACACCACTCATTCCGCCCGCCAATCGTTCACTACAATCTCAAGCCAAGCAACATCTTGCTTGACGACAACTTCAACCCGAAGATCTGCGATTACGGGCTGGCAAGGCTGCTAACAAAGCTCGACAAGCACGTCGTGAACAACAGATTCCAGAGTGCATTGGGGTATGTTGCACCAGAGTTGGCATGCCAGAGCATAAGGGTGAACGAGAAATGCGACGTACACGGGTTCGGGGTGATGATTCTGGAGATCGTGACGGGACGGAGGCCGGTGGAGTATGGAGAGGACAATGTGGTGATCTTGACAGACCATGTGAGGTATTTGCTTGAGAGGGGAAATGTGTTGGAGTGTATAGACGCAAGCATGGGTGAATATTTAGAAGATGAAGTTGTGCCAATTCTGAAACTGGCTTTGGTTTGCACTTCTCAAATTCCTTCAAGCAGGCCTTCAATGGCGGAAGTGGTGCAGATTCTACAGGTCATACAGGCTCCAGTTCCACAGAGAATAGAAGCATTTTGA 3048 47.67 MGFLRFLLLPLLGFMALLLPCCCIAGNGVSPQLNDDILGLIVFKSDLHDPSSSLASWNEDDESPCSWRFVKCNPVSGRVSEVSIDGLGLAGRIGRGLEKLQHLKVLSLSNNNFTSNLSPELVLPASLERVNFSRNGLSGRIPSSVIAMSSVRFLDFSDNLFSGPLSDEMFINCSSLHFVSFASNLLEGPVPKTLLTRCLYLNTLNLSTNRFSGSLDFAPGIWSLTRLRTLDLSNNALSGYFPQGISAIHNLKELKLQSNQFSGPLPSDLGLCPHLGSLDVSRNRLAGPLPESMRLLTSLTFLDIGFNTFSGEFPQWIGNMTSLEYVDFYSNGFTGSLPLEMGGLRSVKFMSFSNNKLSGNIPKSLMDCSKLSVIKLGGNSFNGGLPEGLFELGLEEIDFSHNELTGSIPSGSSRLYESLTRLDLSRNNLKGNFPAEMGLYKNLRYLNLSLNNLQAKIPPEMGFFQNLSVLDLRSSAVYGEIPGDLCDSGSLGILQLDGNSLSGPIPDQIGNCLSLYLLSLSHNNLSGSIPKSISKLSKLEILRLESNELSGEIPQELGVLQNLLAVNISYNRLTGRLPVGGIFPSLDQSALQGNLGICSPLLKGPCKMNVPKPLVLDPNAYPTQMGPQSSRNKPSEYSKPSHHVFFSVSAVVAISAATLIAIGVLVITLLNVSARRRSLAFVDNALESMCSSSSKSGTVAAGKLILFDSSSRGSPNWVSNHEELLNKASEIGGGVFGTVYKVSLGGDGGGGRVVAIKKLVKSNMIQNLEDFDREIRILGKVKHPNLISLKGYYWTTQTQLLVMEYAPNGSLQTQLHGRLPSTPPLSWENRFKIVLGTAKGLAHLHHSFRPPIVHYNLKPSNILLDDNFNPKICDYGLARLLTKLDKHVVNNRFQSALGYVAPELACQSIRVNEKCDVHGFGVMILEIVTGRRPVEYGEDNVVILTDHVRYLLERGNVLECIDASMGEYLEDEVVPILKLALVCTSQIPSSRPSMAEVVQILQVIQAPVPQRIEAF 1015
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6839872 6844569 + MC05g0804 Mch5g0924 688343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0924 1015 Pfam Protein kinase domain 727 999 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0924 1015 Gene3D Ribonuclease Inhibitor 196 300 IPR032675 -
Mch5g0924 1015 FunFam Leucine-rich repeat receptor-like protein kinase 33 191 - -
Mch5g0924 1015 ProSitePatterns Protein kinases ATP-binding region signature. 731 758 IPR017441 GO:0005524(InterPro)
Mch5g0924 1015 Pfam Leucine rich repeat N-terminal domain 33 73 IPR013210 -
Mch5g0924 1015 SUPERFAMILY L domain-like 51 386 - -
Mch5g0924 1015 FunFam Inactive leucine-rich repeat receptor-like protein kinase 316 609 - -
Mch5g0924 1015 Gene3D Ribonuclease Inhibitor 301 612 IPR032675 -
Mch5g0924 1015 SMART LRR_typ_2 248 272 IPR003591 -
Mch5g0924 1015 SMART LRR_typ_2 536 560 IPR003591 -
Mch5g0924 1015 SMART LRR_typ_2 224 247 IPR003591 -
Mch5g0924 1015 SMART LRR_typ_2 100 124 IPR003591 -
Mch5g0924 1015 SUPERFAMILY Protein kinase-like (PK-like) 726 1008 IPR011009 -
Mch5g0924 1015 Gene3D Ribonuclease Inhibitor 34 195 IPR032675 -
Mch5g0924 1015 SUPERFAMILY L domain-like 319 588 - -
Mch5g0924 1015 ProSiteProfiles Protein kinase domain profile. 725 1004 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g0924 1015 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 330 460 IPR046959 -
Mch5g0924 1015 CDD STKc_IRAK 731 1002 - -
Mch5g0924 1015 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 806 1010 - -
Mch5g0924 1015 Gene3D Phosphorylase Kinase; domain 1 714 805 - -
Mch5g0924 1015 Gene3D Transferase(Phosphotransferase) domain 1 806 1011 - -
Mch5g0924 1015 Pfam Leucine Rich Repeat 226 246 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 394 413 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 298 320 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 538 559 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 250 270 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 102 121 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 442 462 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 514 536 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 491 512 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 Pfam Leucine Rich Repeat 418 436 IPR001611 GO:0005515(InterPro)
Mch5g0924 1015 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 192 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1493 Mch-Chr10:14889416 Mch5g0924 Mch-Chr5:6839872 2.08E-92 dispersed
Mch5g0924 Mch-Chr5:6839872 Mch5g2010 Mch-Chr5:19743626 1.55E-105 dispersed
Mch5g0924 Mch-Chr5:6839872 Mch4g2458 Mch-Chr4:25472963 2.07E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77411 PF00069 Pkinase 1.00E-41 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0924 - - - 0.0