Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0925 GCGATGGCTAGATCTTTCCTACAGGTAGCTGCTACAGAGGAGGTTGCTTCCCCTCTTAAATTTGTTCAGATTGAAGGATTGGTTATATTGAAGATAATCAAGCATTGCAAGGAGTTTTCTCCAGCTCTTGTGACTGGGCAACTTCTAGGGTTAGATGTTGGTAGCACTCTTGAAGTTACTAATTGCTTTCCCTTCCCGACTCGGGAGGAGGATGAGGAGATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAAGTCAATGTTGACAATAATACTGTCGGATGGTACCAGTCAACCTTTTTAGGTTCATATCAGACAGTAGAGCTGATTGAGACCTTTATGAACTATCAGGAAAATATTAGACGATGTGTCTGCATAATTTATGACCCATCGAGGTCCAATCAAGGCGTCTTAGCTCTGAAAGCGTTGAAGCTTTCAGATTCTTTTATGGAGCTTTACCGCAGTAACAACTTCACAGGAGAGAAGTTGAGGGAGAAGAACCTATCCTGGGTGGGAATTTTTGAGGAAATACCTATAAAAGTTTCAAATTCAGCTCTGATTAGTGCTTTTATGACGGAGCTTGAAGCCGACTCTCCAGTCACCCAGTGTGATTATGACCGACTGCAACTTTCAACCAACCCATTTATGGAGAGGAATGTGGAATTTCTGATCGAGTGTATGGATGATTTGTCAGTGGAGCAGCAGAAGTTTCAATTCTATTATCGGAGCCTGACCCGTCAGCAAGCCCAGCAGCAAGCATGGCTTCAGAAGAGAAGGGCCGAGAACATGACGAGGAAGGCAGCAGGAGAAGAACCTCTCCCTGAGGAGGATCCTTCAAACCCGATCTTTAAACCACTCCCCGAGCCATCGCGTTTGGATAGCTATCTCATAACGAATCAAATAGCAAATTACTGCAACCAAATTAATGGGGTTGCCGGACAGAGTTTCAACCGACTCCATTTGATGAAGGCTTTGCACGACAATTGA 1005 44.18 AMARSFLQVAATEEVASPLKFVQIEGLVILKIIKHCKEFSPALVTGQLLGLDVGSTLEVTNCFPFPTREEDEEIEADGANYQLEMMRCLREVNVDNNTVGWYQSTFLGSYQTVELIETFMNYQENIRRCVCIIYDPSRSNQGVLALKALKLSDSFMELYRSNNFTGEKLREKNLSWVGIFEEIPIKVSNSALISAFMTELEADSPVTQCDYDRLQLSTNPFMERNVEFLIECMDDLSVEQQKFQFYYRSLTRQQAQQQAWLQKRRAENMTRKAAGEEPLPEEDPSNPIFKPLPEPSRLDSYLITNQIANYCNQINGVAGQSFNRLHLMKALHDN 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6845505 6850004 - MC05g0805 Mch5g0925 688344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0925 334 SMART pad1_6 21 154 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Mch5g0925 334 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 20 124 IPR000555 GO:0005515(InterPro)|GO:0008233(InterPro)|GO:0008237(InterPro)
Mch5g0925 334 ProSiteProfiles MPN domain profile. 22 155 IPR037518 -
Mch5g0925 334 MobiDBLite consensus disorder prediction 262 291 - -
Mch5g0925 334 CDD MPN_eIF3h 20 283 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Mch5g0925 334 FunFam Eukaryotic translation initiation factor 3 subunit H 1 210 - -
Mch5g0925 334 Hamap Eukaryotic translation initiation factor 3 subunit H [EIF3H]. 17 334 IPR027524 GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0005852(InterPro)
Mch5g0925 334 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 7 325 IPR050242 GO:0003743(PANTHER)|GO:0005829(PANTHER)|GO:0005852(PANTHER)|GO:0008237(PANTHER)|GO:0016282(PANTHER)|GO:0042788(PANTHER)
Mch5g0925 334 Gene3D Cytidine Deaminase, domain 2 1 211 - -
Mch5g0925 334 MobiDBLite consensus disorder prediction 265 279 - -
Mch5g0925 334 Pfam C-terminal region of eIF3h 140 332 IPR045810 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0925 K03247 - csv:101211860 650.588