Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g0954 ATGATGGAACAATATTTCCCATCAACTTCCCTCTCGCTGCACCAGATGCTGATTTCTCGAGCTCCCGAGCTCGCCGGGATCCATGGAGCTGGCCCGTTACAGCGCCCGCACGCCTCCGGTGGGTTTCCGGTGTTTCGCGATGTTTCTATCGACGACATGTCGGTCGATGGAGTGAGGAGTATGAAGGATGACGTCGTTTCGCTGAGTAGAAGCGTCCGTTTTGTTGATGGGTCAGCCGGGGAGGGAGTGGAAGAGCTGGAGAAGAAAGCGGCGGGGGCCGGGACGAGTACAAGGACGACCGGGCCGGAGGCAGGGCGGGGAGATTTTGAGAAGAAGAAGAGGAGGCAGAGATATGCCTTTCAAACCAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTGCAAAGACTGACTAAAGATGAAGCTGTGGTTATGACCACTTATGAAGGCATTCACTCTCATCCCATTGACAAATCCACTGATAACTTTGAGCATATTTTGACTCAGATGCAAATTTACACTTCTCATTGA 627 49.28 MMEQYFPSTSLSLHQMLISRAPELAGIHGAGPLQRPHASGGFPVFRDVSIDDMSVDGVRSMKDDVVSLSRSVRFVDGSAGEGVEELEKKAAGAGTSTRTTGPEAGRGDFEKKKRRQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTKDEAVVMTTYEGIHSHPIDKSTDNFEHILTQMQIYTSH 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 7126538 7129119 - MC05g0825 Mch5g0954 688373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g0954 208 Pfam WRKY DNA -binding domain 130 187 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0954 208 FunFam WRKY transcription factor 57 115 189 - -
Mch5g0954 208 ProSiteProfiles WRKY domain profile. 124 189 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0954 208 SMART WRKY_cls 129 188 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0954 208 Gene3D WRKY domain 114 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch5g0954 208 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 98 189 IPR044810 GO:0003700(InterPro)
Mch5g0954 208 MobiDBLite consensus disorder prediction 85 107 - -
Mch5g0954 208 SUPERFAMILY WRKY DNA-binding domain 121 188 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0954 Mch-Chr5:7126538 Mch8g1391 Mch-Chr8:10352924 1.06E-58 dispersed
Mch5g0954 Mch-Chr5:7126538 Mch1g1999 Mch-Chr1:19577315 1.86E-31 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43381 PF03106 WRKY 5.30E-26 CL0274 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g0954 - - - 0.0