Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g0954 | ATGATGGAACAATATTTCCCATCAACTTCCCTCTCGCTGCACCAGATGCTGATTTCTCGAGCTCCCGAGCTCGCCGGGATCCATGGAGCTGGCCCGTTACAGCGCCCGCACGCCTCCGGTGGGTTTCCGGTGTTTCGCGATGTTTCTATCGACGACATGTCGGTCGATGGAGTGAGGAGTATGAAGGATGACGTCGTTTCGCTGAGTAGAAGCGTCCGTTTTGTTGATGGGTCAGCCGGGGAGGGAGTGGAAGAGCTGGAGAAGAAAGCGGCGGGGGCCGGGACGAGTACAAGGACGACCGGGCCGGAGGCAGGGCGGGGAGATTTTGAGAAGAAGAAGAGGAGGCAGAGATATGCCTTTCAAACCAGGAGTCAAGTTGATATTCTTGATGATGGTTATAGATGGAGAAAATATGGACAAAAGGCTGTGAAGAACAACAAATTCCCAAGAAGCTACTATAGATGTACACACCAAGGTTGCAAAGTGAAGAAGCAAGTGCAAAGACTGACTAAAGATGAAGCTGTGGTTATGACCACTTATGAAGGCATTCACTCTCATCCCATTGACAAATCCACTGATAACTTTGAGCATATTTTGACTCAGATGCAAATTTACACTTCTCATTGA | 627 | 49.28 | MMEQYFPSTSLSLHQMLISRAPELAGIHGAGPLQRPHASGGFPVFRDVSIDDMSVDGVRSMKDDVVSLSRSVRFVDGSAGEGVEELEKKAAGAGTSTRTTGPEAGRGDFEKKKRRQRYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCKVKKQVQRLTKDEAVVMTTYEGIHSHPIDKSTDNFEHILTQMQIYTSH | 208 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 7126538 | 7129119 | - | MC05g0825 | Mch5g0954 | 688373 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g0954 | 208 | Pfam | WRKY DNA -binding domain | 130 | 187 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0954 | 208 | FunFam | WRKY transcription factor 57 | 115 | 189 | - | - | |
Mch5g0954 | 208 | ProSiteProfiles | WRKY domain profile. | 124 | 189 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0954 | 208 | SMART | WRKY_cls | 129 | 188 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0954 | 208 | Gene3D | WRKY domain | 114 | 188 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Mch5g0954 | 208 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 98 | 189 | IPR044810 | GO:0003700(InterPro) | |
Mch5g0954 | 208 | MobiDBLite | consensus disorder prediction | 85 | 107 | - | - | |
Mch5g0954 | 208 | SUPERFAMILY | WRKY DNA-binding domain | 121 | 188 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch5g0954 | Mch-Chr5:7126538 | Mch8g1391 | Mch-Chr8:10352924 | 1.06E-58 | dispersed | |
Mch5g0954 | Mch-Chr5:7126538 | Mch1g1999 | Mch-Chr1:19577315 | 1.86E-31 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43381 | PF03106 | WRKY | 5.30E-26 | CL0274 | Mch | TF |
Pathway information
