Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch5g1064 | ATGCAGAAATTGAGACAAGTTCTTGTTGAGCATGCACTCGCTAATGGTGATAACGAAGTGAACTCATACACTTCAATCTTCCAAAAGATTGGTACTTTTGAAGAGGAGTTAAAGGCAGTTTTACCAAAGGAGGTTGAAAATACAAGGTTGGAATATGAGAACGGAAATTCTAAAATTGGAAATCAAATTAAGGACTGCAGATCTTATCCACTATACAGATTTGTAAGAGAAGAATTGGGATTAAAATTGCTAACAGGAGAAAAGGTGATATCTCCAGGAGAAGAATGCGAGAAGGTGTTCACAGTTTTGTATCAAGGAAAGATGATTGATTCTATCTTCGAGTGCTTGAAAGAATGGAACGGTGCTCCAATCCCTATTTGCTAA | 384 | 36.98 | MQKLRQVLVEHALANGDNEVNSYTSIFQKIGTFEEELKAVLPKEVENTRLEYENGNSKIGNQIKDCRSYPLYRFVREELGLKLLTGEKVISPGEECEKVFTVLYQGKMIDSIFECLKEWNGAPIPIC | 127 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 8651912 | 8652638 | - | MC05g_new0161 | Mch5g1064 | 688483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch5g1064 | 127 | Gene3D | - | 1 | 59 | IPR023144 | - | |
| Mch5g1064 | 127 | PANTHER | HISTIDINE AMMONIA-LYASE | 1 | 127 | IPR001106 | GO:0016841(PANTHER)|GO:0045548(PANTHER) | |
| Mch5g1064 | 127 | Gene3D | Fumarase/aspartase (Central domain) | 60 | 127 | - | - | |
| Mch5g1064 | 127 | SUPERFAMILY | L-aspartase-like | 1 | 127 | IPR008948 | GO:0003824(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch5g1064 | Mch-Chr5:8651912 | Mch9g1792 | Mch-Chr9:19796163 | 1.64E-55 | dispersed | |
| Mch5g1064 | Mch-Chr5:8651912 | Mch1g0817 | Mch-Chr1:11724681 | 6.86E-63 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch5g1064 | K10775 | - | csv:101204574 | 223.787 |