Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1135 AACCTTTTGCTGTCTACAATTTCCTCCTTTTTCTTTTTCTTGAAGCACATTTTTCCAATACCAATCAATCAAATAAATAATATAATCTGTCATTTCAAAATCCCTTTGGAGGGGAAGTGTGAAGAGAAATCTGGTGGAGGAATGGCTTTTAGTTTTGGCTTGGTTTCTGCGTATTGGAACAAGAGGCGTAGGCGCAATAAATCATCACAAGATCATCAAACTTCTTCAGACCCTTGGATCTATAGGCCTGTTGAGCTGTGGCAACTTGAGGATCAAACTACCCTCCAAACGCCCACCAAAAGGCACCATGGATCTTGTGTTTTCACGCTCCGGGAAATGGAAGAGGCCACATGCTCGTTTAGCGACGACAACTTGCTCGGTAAAGGTGGCTTCGGCCGTGTTTACCGAGGTACCTTGCGCTCTGGAGAGGTTGTAGCCATAAAGAAAATGGAGCTGCCAGCATTCAAAGAAGCAGAAGGAGAGCGAGAATTCCGAGTGGAAGTTGACATTCTGAGCAGATTGGAGCATCCAAATCTTGTTTCACTCATAGGGTACTGTGCAGATGGGAAGCATCGGTTTCTGGTGTATGAATATATGCATAAAGGGAACCTCCAACAACATTTAAATGGATTAGGAACTGGAGAAGCAAAGATGGATTGGGAAGGGAGGCTTAAAGTGGCACTTGGTGCAGCAAAGGGATTGGCCTATCTCCATTCATCTTCTGCTGCTGGAATGCCTATTGTCCACAGGGATTTCAAATCCACTAACATTCTTCTCGACTCCAATTTCGATGCAAAGATATCAGACTTTGGGCTTGCAAAGTTTATGCCAGAGGGACAGGAATCGCATGTGACTGCTAGAGTCCTCGGCACGTTTGGATACTTTGATCCTGAGTATACCTCGACAGGAAAACTGAGTCTGCAAAGTGATGTATATGCATTTGGAGTGGTTCTTCTTGAGCTCCTCACAGGCCGCCGAGCAGTGGACTTGAACCAGGGCCCAAATGATCAAAACCTCGTCGTACAGGTAAGGCATATATTGAATGATCGGAGAAAGTTACGTAAGGTGATAGATCCAGAAATGAGTCGAAGTTCCTATACGATGGAATCCATTGTCATATTTGCAAACCTAGCTTCACGTTGTGTTCGAACAGAGAGTAGCGAAAGACCAACAATGGCAGAATGTGTAAGAGAGCTCCAAATGATCATCTACACGAAGTTACAAACTCGCAAGACCTAG 1239 44.55 NLLLSTISSFFFFLKHIFPIPINQINNIICHFKIPLEGKCEEKSGGGMAFSFGLVSAYWNKRRRRNKSSQDHQTSSDPWIYRPVELWQLEDQTTLQTPTKRHHGSCVFTLREMEEATCSFSDDNLLGKGGFGRVYRGTLRSGEVVAIKKMELPAFKEAEGEREFRVEVDILSRLEHPNLVSLIGYCADGKHRFLVYEYMHKGNLQQHLNGLGTGEAKMDWEGRLKVALGAAKGLAYLHSSSAAGMPIVHRDFKSTNILLDSNFDAKISDFGLAKFMPEGQESHVTARVLGTFGYFDPEYTSTGKLSLQSDVYAFGVVLLELLTGRRAVDLNQGPNDQNLVVQVRHILNDRRKLRKVIDPEMSRSSYTMESIVIFANLASRCVRTESSERPTMAECVRELQMIIYTKLQTRKT 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10013589 10016678 + MC05g0950 Mch5g1135 688554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1135 412 FunFam receptor-like serine/threonine-protein kinase NCRK 199 411 - -
Mch5g1135 412 ProSiteProfiles Protein kinase domain profile. 120 403 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1135 412 CDD STKc_IRAK 126 400 - -
Mch5g1135 412 Gene3D Phosphorylase Kinase; domain 1 85 198 - -
Mch5g1135 412 Gene3D Transferase(Phosphotransferase) domain 1 199 411 - -
Mch5g1135 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 247 259 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1135 412 SUPERFAMILY Protein kinase-like (PK-like) 100 405 IPR011009 -
Mch5g1135 412 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524(InterPro)
Mch5g1135 412 PANTHER OS01G0750732 PROTEIN 62 403 IPR050885 -
Mch5g1135 412 FunFam serine/threonine-protein kinase PBS1-like 87 198 - -
Mch5g1135 412 Pfam Protein kinase domain 122 397 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g1135 Mch-Chr5:10013589 Mch8g2045 Mch-Chr8:23342933 3.26E-93 dispersed
Mch5g1135 Mch-Chr5:10013589 Mch5g1136 Mch-Chr5:10017529 3.68E-69 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77414 PF00069 Pkinase 3.30E-49 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1135 - - - 0.0