Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1136 ATGGGGGCGATTGTGGCGGTGTCAACTCTGCAAACGCTGCTACTTTTGGCTTTCTTCTACTCGGCCGCTTCCTATATTGATCCCCGTGATTTTTCGGTGCTTAAATCCTTGAAAGATGGATGGCAAAATACACCACCAAGCTGGGGAACGTCAGATGATCCCTGTGCAGCTCCCTGGGAAGGAGTAATTTGCAAGAATTCAAGAGTAACTGCATTGAGATTATCAAGTATGGGCCTAAAAGGTAAACTTGGTGGTGACATCGGAGGCCTTTCTGAACTGAGATCATTGGACCTTTCATCCAATCGAGGTCTCACTGGTTCGATCTCTCCAGCGCTGGGGAATCTGCCGAATTTGAATACCTTGATCCTGTCTGCTTGTGGGTTTAGCGGTAGTATTCCAGAAGAATTGGGCAATCTTGCTGAGCTTTCCTTCTTGGCTTTAAATTCTAACAACTTCACTGGTACCATACCACCAACTTTGGGAAAACTCTCCAAACTCTATTGGCTAGACTTGGCAGAAAATCAGTTGACGGGTGCTCTCCCGGTTTCAACTTCCAATTCCCCGGGTTTGGATCTCCTTCTTGAGGCAAAACATTTTCATTTCAGCGGAAACCAGTTATCAGGTACCATTTCACCTAAAATTTTTAGCTCCGAGATGATATTATTACACATATTATTTGATGGAAATAAATTTTCTGGGAGTATCCCATCAACATTGGGACTTGTTAAGACTCTTGAGGTTCTCCGACTTGATCGAAATTATCTAACAGGAAATGTCCCATCAAATCTAAGCAGCCTAATAAATGTCAATGAATTGAATTTAGCCTACAATAAGCTGATAGGTCCACTGCCAAACTTGACTCAAATGACTTCACTAAATTACGTGGACCTTAGTAACAACTCATTTGATTCATCAGCAGCTCCGGAGTGGTTCACAAATCTACCATCGCTCACCACTCTGATCATTGAATATGGGCCGATACGAGGAAATGTGCCACAAGGAGTCTTTAGCTTACCACAAATTCAACAAGTAAAACTGAAGAACAATGCATTAAGTGGGACATTAAATATGGGTGACAGCATCAGCCAACAATTGCAGCTCGTTGATTTGCAAAATAACAATATTCCTTCAGTTACCTCTATTTCAGGATATACCAAAACTTTGATGCTGACAGGAAATCCGGTGTGTAGCGTTGATGCGTTCTCAACTATGAATTTTTGCCGGCTTCAAAAGCAGCCAACGGAATCTTATTCTACTAGCCTTGTCCACTGTGGAAGCAAGTCATGTCCTCTTTATGAGGAGCTGAACCCTCAGAGTTGTGAATGTGCATATCCATATGAAGGGACTTTATACTTTAGAGGACCCTCGTTCAGGGAATTGTCCAATATAACTCTGTTTCATTTACTGGAAATGAGTCTTTTGGATGCATTCAACCTCACGCCTTCTATTCAAAATCCTTTCTTGAATGTTCAAGATTATCTCCAAATGAAGCTGGCACTTTTTCCACCTGATAAGTATTTCAATCGGTCAGACATTCAGAGGATTGGGTTTGATTTGCATAATCAAACTTACAAACCTCCCCACAAGTTTGGGCCATATTATTTCATCGCATTTCCTTATCACTTTTCAGACATGAATAGGGAAACTTCAACCAGTTACGGAGTGGTAATTGGAATAGCTGTTGGCGGTGCCTTTCTCGTTCTATGCCTCATTGGAGTTGTAATATATGCAATTCGGCAAAAGAAACGTGCAGAAAATGCCAAGCCATTTGCTTTATGGGCACCAAGTGGAGACGATAGTGGAGGTGCACCACAATTAAAGGGAGCCAGATGGTTTTCTTATGATGAACTGAAAAAATGCACAAATAATTTCTCCATGAGCAATGAGATAGGATCCGGAGGATTTGGCAAGGTATACAGAGGAGTTCTTGTGGATGGAAAAGTAGTTGCAATCAAAAGAGCTCAACAAGGATCAATGCAGGGTGGCCTTGAGTTCAAGACAGAAATTGAACTGCTTTCACGAGTTCATCACAAGAATCTTCTTGGCCTTATTGGATTTTGTTTTGAACAAGGAGAACAGATGCTTGTTTATGAATTTATGCCTAATGGAACTCTTAGACAGAGTCTAGCTGGGAAATCCGGTATTTATCTTGATTGGAAGAGAAGACTTCGTATTGCACTTGGATCTGCTAGAGGATTGACTTACTTACACGAGCTCGCGAATCCTCCCATAATCCATAGAGATGTTAAGTCAACCAACATTTTGCTGGATGAACATTTAAATGCAAAGGTTGCAGATTTTGGTTTGTCCAAGCTTGTCTCAGATAGTGGAAAGGGACATGTTTCTACTCAAGTTAAAGGGACATTGGGTTATTTGGATCCCGAATATTACATGAGTCAACAATTGACCGAGAAAAGTGACGTGTACAGCTTTGGAGTCGTTATGTTGGAACTGCTAACTGCTAAGTTGCCAATTGAGAAAGGAAAGTACATAGTTCGCGAGGTGCGTTTGTTGATGAATAGGAGTGATGAAGAATATTATGGTTTGAAGCAGATTATAGACGAGACGATAATAGATAATACAACGAAACTTGTCGGGTTCGCAAAGTTCTTGGAATTGGCCATGCAATGCGTTGAAGAATTAGCTGCAGACCGCCCCACAATGGGTGAAGTGGTTAAGACAATTGAGAGCATTTTGCAGAATGATGGAATAAATACGAACGCAACATCTGCATCTTCATCTGCCACAGACTTTGTGACTTCCAAAACTGCTCCTAGGCATCCCTACAATGATGCTACACCCAAAGAGGATGCCAACAGCCAATGA 2826 41.61 MGAIVAVSTLQTLLLLAFFYSAASYIDPRDFSVLKSLKDGWQNTPPSWGTSDDPCAAPWEGVICKNSRVTALRLSSMGLKGKLGGDIGGLSELRSLDLSSNRGLTGSISPALGNLPNLNTLILSACGFSGSIPEELGNLAELSFLALNSNNFTGTIPPTLGKLSKLYWLDLAENQLTGALPVSTSNSPGLDLLLEAKHFHFSGNQLSGTISPKIFSSEMILLHILFDGNKFSGSIPSTLGLVKTLEVLRLDRNYLTGNVPSNLSSLINVNELNLAYNKLIGPLPNLTQMTSLNYVDLSNNSFDSSAAPEWFTNLPSLTTLIIEYGPIRGNVPQGVFSLPQIQQVKLKNNALSGTLNMGDSISQQLQLVDLQNNNIPSVTSISGYTKTLMLTGNPVCSVDAFSTMNFCRLQKQPTESYSTSLVHCGSKSCPLYEELNPQSCECAYPYEGTLYFRGPSFRELSNITLFHLLEMSLLDAFNLTPSIQNPFLNVQDYLQMKLALFPPDKYFNRSDIQRIGFDLHNQTYKPPHKFGPYYFIAFPYHFSDMNRETSTSYGVVIGIAVGGAFLVLCLIGVVIYAIRQKKRAENAKPFALWAPSGDDSGGAPQLKGARWFSYDELKKCTNNFSMSNEIGSGGFGKVYRGVLVDGKVVAIKRAQQGSMQGGLEFKTEIELLSRVHHKNLLGLIGFCFEQGEQMLVYEFMPNGTLRQSLAGKSGIYLDWKRRLRIALGSARGLTYLHELANPPIIHRDVKSTNILLDEHLNAKVADFGLSKLVSDSGKGHVSTQVKGTLGYLDPEYYMSQQLTEKSDVYSFGVVMLELLTAKLPIEKGKYIVREVRLLMNRSDEEYYGLKQIIDETIIDNTTKLVGFAKFLELAMQCVEELAADRPTMGEVVKTIESILQNDGINTNATSASSSATDFVTSKTAPRHPYNDATPKEDANSQ 941
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10017529 10024238 - MC05g0951 Mch5g1136 688555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1136 941 Pfam Protein tyrosine and serine/threonine kinase 625 894 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1136 941 SMART serkin_6 624 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1136 941 Gene3D Ribonuclease Inhibitor 285 430 IPR032675 -
Mch5g1136 941 ProSitePatterns Protein kinases ATP-binding region signature. 630 652 IPR017441 GO:0005524(InterPro)
Mch5g1136 941 SUPERFAMILY L domain-like 41 353 - -
Mch5g1136 941 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 700 911 - -
Mch5g1136 941 FunFam Leucine-rich repeat family protein 29 185 - -
Mch5g1136 941 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 104 899 IPR050647 -
Mch5g1136 941 MobiDBLite consensus disorder prediction 909 941 - -
Mch5g1136 941 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Mch5g1136 941 FunFam Leucine-rich repeat protein kinase family protein 595 699 - -
Mch5g1136 941 SUPERFAMILY L domain-like 334 400 - -
Mch5g1136 941 Gene3D Transferase(Phosphotransferase) domain 1 700 920 - -
Mch5g1136 941 SUPERFAMILY Protein kinase-like (PK-like) 609 909 IPR011009 -
Mch5g1136 941 Gene3D Ribonuclease Inhibitor 29 186 IPR032675 -
Mch5g1136 941 FunFam Predicted protein 188 410 - -
Mch5g1136 941 ProSitePatterns Serine/Threonine protein kinases active-site signature. 744 756 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch5g1136 941 CDD STKc_IRAK 630 898 - -
Mch5g1136 941 Gene3D Ribonuclease Inhibitor 187 284 IPR032675 -
Mch5g1136 941 Gene3D Phosphorylase Kinase; domain 1 598 699 - -
Mch5g1136 941 MobiDBLite consensus disorder prediction 909 927 - -
Mch5g1136 941 ProSiteProfiles Protein kinase domain profile. 624 899 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch5g1136 941 Pfam Leucine Rich Repeat 142 163 IPR001611 GO:0005515(InterPro)
Mch5g1136 941 Pfam Leucine Rich Repeat 93 115 IPR001611 GO:0005515(InterPro)
Mch5g1136 941 Pfam Leucine Rich Repeat 117 139 IPR001611 GO:0005515(InterPro)
Mch5g1136 941 Pfam Leucine Rich Repeat 245 266 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch1g0602 Mch-Chr1:10190215 Mch5g1136 Mch-Chr5:10017529 9.19E-91 dispersed
Mch4g1253 Mch-Chr4:14578151 Mch5g1136 Mch-Chr5:10017529 1.50E-06 dispersed
Mch5g1136 Mch-Chr5:10017529 Mch5g2026 Mch-Chr5:19850283 0 dispersed
Mch5g1135 Mch-Chr5:10013589 Mch5g1136 Mch-Chr5:10017529 3.68E-69 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77415 PF07714 PK_Tyr_Ser-Thr 4.20E-46 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1136 - - - 0.0