Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1160 ATGTATCATCACCAACATCGTCCGGGGGCCGGGAAGAGCATGCAGTCGTCGGAGAGGCATTTGTTTCTACAGGGAGGGAATGGACCGGGTGGGGATTCAGGCCTCGTTCTTTCGACCGATGCTAAGCCGAGGCTGAAGTGGACTCCTGATCTTCATGACCGTTTTGTTGAAGCTGTCAACCAGCTCGGGGGAGCTGACAAGGCAACTCCTAAAACTGTTATGAAAATCATGGGCATTCCGGGGCTTACCTTGTACCACTTGAAGAGCCATCTCCAGAAATACAGGCTGAGCAAGAATCTGCAGGGACAAGCCAATGGTGGAAATGGAAGCAACAAAACTGGCAGCGTGGCTGTGTCAGGAGACCAGAGATTGGCTGAGCCTAATGGACCAACTCGCACCACCACCAACATACTCGTCGCCCCTCACTCCAACAACAAAAGCCTTCAGATCAGCGAAACGATACAGATGCAGATCGAAGTCCAGAAAAGGCTACACGAGCAACTCGAGGTACAACGACACTTACAACTACGGATAGAGGCACAAGGGAAGTATCTCCAAACAGTGCTGGAGAAGGCTCAGGAGACGCTGGGGAGACAGAATTTAGGCACGGTGGGGCTGGAAGCTGCAAAAGTTCAGCTCTCAGAACTCGTCTCAAAGGTTTCCACACAGTGCCTGACCGCAGCCTTTCCCGAGCTCCATCAGGGCCAGGGTCAGGCCCAGCGGCTCGGACCGCAACAGACCCAGCCCCAAGACTGCTCAATGGATAGCTGCCTCACCTCCTGTGAAGGAACGTCATCCAAGGACCAAGACCAGCTCCTCCTCCACACCAGCCACTTGGCCCTTAGACCCTACAATGTCCCTGCCCCCGGCCCCGCCTCGCTCCTGGCCTCCACTGCCGGCGACAACCATCATGGTGGCTTGTCCATGAGCATTGGAGGAGTGCTGCAAGGAGAGAAGGGTGACGGGTATAATGGGAGAATGTTGAATAATAGCAGTAAAAGGAAGGAGGTCGGGGCAGGGGCGGAGAGATATAGAATGGCAGCCGTGGCGCCTTCTTCGTTGGACTTAAATGCTGGAGATGATCAACTTAGCAATAATGATCATGTGTCTTCTACTAATTGCAAGATGTTTGATTTGAATGGTTTTAGCTGA 1152 53.3 MYHHQHRPGAGKSMQSSERHLFLQGGNGPGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLQGQANGGNGSNKTGSVAVSGDQRLAEPNGPTRTTTNILVAPHSNNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHQGQGQAQRLGPQQTQPQDCSMDSCLTSCEGTSSKDQDQLLLHTSHLALRPYNVPAPGPASLLASTAGDNHHGGLSMSIGGVLQGEKGDGYNGRMLNNSSKRKEVGAGAERYRMAAVAPSSLDLNAGDDQLSNNDHVSSTNCKMFDLNGFS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10518497 10521462 + MC05g0965 Mch5g1160 688579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1160 383 MobiDBLite consensus disorder prediction 1 37 - -
Mch5g1160 383 Pfam MYB-CC type transfactor, LHEQLE motif 148 195 IPR025756 -
Mch5g1160 383 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Mch5g1160 383 Gene3D - 41 99 - -
Mch5g1160 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Mch5g1160 383 FunFam Myb family transcription factor 41 99 - -
Mch5g1160 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 24 270 IPR046955 GO:0003700(InterPro)
Mch5g1160 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Mch5g1160 383 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0198 Mch-Chr5:1289376 Mch5g1160 Mch-Chr5:10518497 2.00E-41 dispersed
Mch5g1160 Mch-Chr5:10518497 Mch8g1791 Mch-Chr8:17883117 6.85E-47 dispersed
Mch5g1160 Mch-Chr5:10518497 Mch1g1933 Mch-Chr1:19178333 4.95E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43398 PF00249 Myb_DNA-binding 5.50E-08 CL0123 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1160 - - - 0.0