Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1160 ATGTATCATCACCAACATCGTCCGGGGGCCGGGAAGAGCATGCAGTCGTCGGAGAGGCATTTGTTTCTACAGGGAGGGAATGGACCGGGTGGGGATTCAGGCCTCGTTCTTTCGACCGATGCTAAGCCGAGGCTGAAGTGGACTCCTGATCTTCATGACCGTTTTGTTGAAGCTGTCAACCAGCTCGGGGGAGCTGACAAGGCAACTCCTAAAACTGTTATGAAAATCATGGGCATTCCGGGGCTTACCTTGTACCACTTGAAGAGCCATCTCCAGAAATACAGGCTGAGCAAGAATCTGCAGGGACAAGCCAATGGTGGAAATGGAAGCAACAAAACTGGCAGCGTGGCTGTGTCAGGAGACCAGAGATTGGCTGAGCCTAATGGACCAACTCGCACCACCACCAACATACTCGTCGCCCCTCACTCCAACAACAAAAGCCTTCAGATCAGCGAAACGATACAGATGCAGATCGAAGTCCAGAAAAGGCTACACGAGCAACTCGAGGTACAACGACACTTACAACTACGGATAGAGGCACAAGGGAAGTATCTCCAAACAGTGCTGGAGAAGGCTCAGGAGACGCTGGGGAGACAGAATTTAGGCACGGTGGGGCTGGAAGCTGCAAAAGTTCAGCTCTCAGAACTCGTCTCAAAGGTTTCCACACAGTGCCTGACCGCAGCCTTTCCCGAGCTCCATCAGGGCCAGGGTCAGGCCCAGCGGCTCGGACCGCAACAGACCCAGCCCCAAGACTGCTCAATGGATAGCTGCCTCACCTCCTGTGAAGGAACGTCATCCAAGGACCAAGACCAGCTCCTCCTCCACACCAGCCACTTGGCCCTTAGACCCTACAATGTCCCTGCCCCCGGCCCCGCCTCGCTCCTGGCCTCCACTGCCGGCGACAACCATCATGGTGGCTTGTCCATGAGCATTGGAGGAGTGCTGCAAGGAGAGAAGGGTGACGGGTATAATGGGAGAATGTTGAATAATAGCAGTAAAAGGAAGGAGGTCGGGGCAGGGGCGGAGAGATATAGAATGGCAGCCGTGGCGCCTTCTTCGTTGGACTTAAATGCTGGAGATGATCAACTTAGCAATAATGATCATGTGTCTTCTACTAATTGCAAGATGTTTGATTTGAATGGTTTTAGCTGA 1152 53.3 MYHHQHRPGAGKSMQSSERHLFLQGGNGPGGDSGLVLSTDAKPRLKWTPDLHDRFVEAVNQLGGADKATPKTVMKIMGIPGLTLYHLKSHLQKYRLSKNLQGQANGGNGSNKTGSVAVSGDQRLAEPNGPTRTTTNILVAPHSNNKSLQISETIQMQIEVQKRLHEQLEVQRHLQLRIEAQGKYLQTVLEKAQETLGRQNLGTVGLEAAKVQLSELVSKVSTQCLTAAFPELHQGQGQAQRLGPQQTQPQDCSMDSCLTSCEGTSSKDQDQLLLHTSHLALRPYNVPAPGPASLLASTAGDNHHGGLSMSIGGVLQGEKGDGYNGRMLNNSSKRKEVGAGAERYRMAAVAPSSLDLNAGDDQLSNNDHVSSTNCKMFDLNGFS 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10518497 10521462 + MC05g0965 Mch5g1160 688579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1160 383 MobiDBLite consensus disorder prediction 1 37 - -
Mch5g1160 383 Pfam MYB-CC type transfactor, LHEQLE motif 148 195 IPR025756 -
Mch5g1160 383 Pfam Myb-like DNA-binding domain 44 95 IPR001005 -
Mch5g1160 383 Gene3D - 41 99 - -
Mch5g1160 383 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 99 IPR017930 -
Mch5g1160 383 FunFam Myb family transcription factor 41 99 - -
Mch5g1160 383 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 24 270 IPR046955 GO:0003700(InterPro)
Mch5g1160 383 NCBIfam myb-like DNA-binding domain, SHAQKYF class 42 97 IPR006447 GO:0003677(InterPro)
Mch5g1160 383 SUPERFAMILY Homeodomain-like 41 97 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1160 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch5g0198 Mch-Chr5:1289376 Mch5g1160 Mch-Chr5:10518497 2.00E-41 dispersed
Mch5g1160 Mch-Chr5:10518497 Mch8g1791 Mch-Chr8:17883117 6.85E-47 dispersed
Mch5g1160 Mch-Chr5:10518497 Mch1g1933 Mch-Chr1:19178333 4.95E-16 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch8g0732 . 15 150 G2-like Transcription Factor Family AT5G42630 62.8 8.9e-40 160.6
Mch11g0241 . 10 152 G2-like Transcription Factor Family AT5G42630 55.2 9.2e-37 150.6
Mch8g3114 . 12 488 G2-like Transcription Factor Family AT2G03500 50.3 2.1e-90 329.7
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT1G25550 58.2 7.6e-57 217.6
Mch9g1987 . 19 253 G2-like Transcription Factor Family AT1G25550 53.8 6.2e-51 198.0
Mch4g1328 . 20 262 G2-like Transcription Factor Family AT3G25790 50.6 2.3e-39 159.5
Mch3g0205 . 1 289 G2-like Transcription Factor Family AT3G46640 50.2 3.5e-61 232.3
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT5G05090 57.4 1.3e-74 276.6
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT5G05090 54.6 9.5e-73 270.4
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT4G13640 56.2 2.9e-62 235.7
Mch5g0198 . 12 320 G2-like Transcription Factor Family AT3G24120 57.6 1.7e-78 289.7
Mch4g0013 . 20 178 G2-like Transcription Factor Family AT3G24120 59.8 3.7e-41 165.6
Mch5g1160 . 35 267 G2-like Transcription Factor Family AT1G69580 50.8 2.2e-42 169.9
Mch4g0013 . 1 360 G2-like Transcription Factor Family AT1G79430 51.8 1.3e-72 270.4
Mch5g0198 . 31 209 G2-like Transcription Factor Family AT1G79430 56.8 1.1e-39 161.0
Mch1g1664 . 82 325 G2-like Transcription Factor Family AT2G01060 55.2 6.5e-57 217.6
Mch1g0471 . 1 301 G2-like Transcription Factor Family AT3G10760 63.2 4.7e-93 338.2
Mch5g1325 . 1 275 G2-like Transcription Factor Family AT3G10760 58.3 8.8e-84 307.4
Mch5g1325 . 1 193 G2-like Transcription Factor Family AT2G40970 61.6 3.2e-62 235.3
Mch1g0471 . 1 202 G2-like Transcription Factor Family AT2G40970 61.0 3.0e-60 228.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43398 PF00249 Myb_DNA-binding 5.50E-08 CL0123 Mch TF