Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1220 ATGAACGATCTTCTTACGGATTCCTTTGAGATCCCTCGGGGTCAACCTTATAGAGGAGGAGACATTGAGCTAGGGGATCTGGGCATGGAGGATTTCTTTAAGAAGGTTCAAGATATTGAAAAACAGAATGAAAAGCTGGATAGGTTACTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAACAACGGATGGAAAAGGATGTCGACGAAGTTGGAAAAGTTGCACGTTCAGTAAAGACCAAAGTCGAGGAACTTGACAGAGAGAATCTCGCAAATAGGCAGAAGCTCGGGTGTGGAAAAGGATCAGGCGTAGATAGATCAAGAACAGCTACTACTCTTGCCTTGAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATTCAACAAGAGTACCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCAAGGGCTGACGAGGAGACGATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACGGGTAATGGACACTCTAGCTGAAATTCAAGAGCGACACAGTGCAGTTAGAGAACTAGAGAGGAAGCTGCTCGAGCTACAGCAGGTATTTCTAGACATGGCGGTGTTGGTAGATGCACAAGGGGATATGCTCGACAATATCGAATCACATGTCACAAGTGCAGTAGATCATGTGCAACAAGGGAATACCGCTCTTCAAAAGGCGAAGAAGCTGCAAAAGAATTCGAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 903 44.08 MNDLLTDSFEIPRGQPYRGGDIELGDLGMEDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKTKVEELDRENLANRQKLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIQQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGRVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12042156 12059451 + MC05g0997 Mch5g1220 688639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1220 300 CDD SNARE_syntaxin1-like 198 260 - -
Mch5g1220 300 FunFam Syntaxin 132 192 292 - -
Mch5g1220 300 SMART tSNARE_6 194 261 IPR000727 -
Mch5g1220 300 PANTHER SYNTAXIN 31 281 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch5g1220 300 CDD SynN 29 186 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 SUPERFAMILY t-snare proteins 27 254 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch5g1220 300 Gene3D - 26 153 - -
Mch5g1220 300 Coils Coil 29 63 - -
Mch5g1220 300 Coils Coil 202 222 - -
Mch5g1220 300 SMART SynN_4 24 150 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 FunFam Syntaxin 132 24 153 - -
Mch5g1220 300 Pfam SNARE domain 235 287 IPR000727 -
Mch5g1220 300 Pfam Syntaxin 31 234 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch5g1220 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Mch5g1220 300 Gene3D - 194 292 - -
Mch5g1220 300 Coils Coil 128 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0631 Mch-Chr2:4305016 Mch5g1220 Mch-Chr5:12042156 4.28E-71 dispersed
Mch2g0632 Mch-Chr2:4309381 Mch5g1220 Mch-Chr5:12042156 6.33E-103 dispersed
Mch3g1169 Mch-Chr3:14936948 Mch5g1220 Mch-Chr5:12042156 1.08E-80 dispersed
Mch5g1220 Mch-Chr5:12042156 Mch5g1533 Mch-Chr5:16307349 1.01E-77 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1220 K08486 - csv:101203075 491.5