Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1220 ATGAACGATCTTCTTACGGATTCCTTTGAGATCCCTCGGGGTCAACCTTATAGAGGAGGAGACATTGAGCTAGGGGATCTGGGCATGGAGGATTTCTTTAAGAAGGTTCAAGATATTGAAAAACAGAATGAAAAGCTGGATAGGTTACTGAGAAAGCTCCAGGATTCACATGAGGAGTCCAAAGCTGTGACTAAAGCTCCAGCAATGAAAGCAATCAAACAACGGATGGAAAAGGATGTCGACGAAGTTGGAAAAGTTGCACGTTCAGTAAAGACCAAAGTCGAGGAACTTGACAGAGAGAATCTCGCAAATAGGCAGAAGCTCGGGTGTGGAAAAGGATCAGGCGTAGATAGATCAAGAACAGCTACTACTCTTGCCTTGAAAAAGAAGTTGAAAGACAAGATGACTGAATTCCAGATTTTACGTGAAAAAATTCAACAAGAGTACCGGGAGGTTGTTGAGAGACGGGTTTTCACAGTCACGGGTGCAAGGGCTGACGAGGAGACGATCGAGAAATTAATTGAAACTGGGGATAGTGAACAAATTTTTCAGAAGGCAATTCAAGAACAAGGGCGAGGACGGGTAATGGACACTCTAGCTGAAATTCAAGAGCGACACAGTGCAGTTAGAGAACTAGAGAGGAAGCTGCTCGAGCTACAGCAGGTATTTCTAGACATGGCGGTGTTGGTAGATGCACAAGGGGATATGCTCGACAATATCGAATCACATGTCACAAGTGCAGTAGATCATGTGCAACAAGGGAATACCGCTCTTCAAAAGGCGAAGAAGCTGCAAAAGAATTCGAGGAAATGGATGTGCATTGCCATCATAATCCTTCTAATCATTGTTGTGGTCATAGTAGTGGGAGTCCTTAAGCCATGGAATAATGGTAAGGGTGCCTAA 903 44.08 MNDLLTDSFEIPRGQPYRGGDIELGDLGMEDFFKKVQDIEKQNEKLDRLLRKLQDSHEESKAVTKAPAMKAIKQRMEKDVDEVGKVARSVKTKVEELDRENLANRQKLGCGKGSGVDRSRTATTLALKKKLKDKMTEFQILREKIQQEYREVVERRVFTVTGARADEETIEKLIETGDSEQIFQKAIQEQGRGRVMDTLAEIQERHSAVRELERKLLELQQVFLDMAVLVDAQGDMLDNIESHVTSAVDHVQQGNTALQKAKKLQKNSRKWMCIAIIILLIIVVVIVVGVLKPWNNGKGA 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 12042156 12059451 + MC05g0997 Mch5g1220 688639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1220 300 CDD SNARE_syntaxin1-like 198 260 - -
Mch5g1220 300 FunFam Syntaxin 132 192 292 - -
Mch5g1220 300 SMART tSNARE_6 194 261 IPR000727 -
Mch5g1220 300 PANTHER SYNTAXIN 31 281 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Mch5g1220 300 CDD SynN 29 186 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 SUPERFAMILY t-snare proteins 27 254 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Mch5g1220 300 Gene3D - 26 153 - -
Mch5g1220 300 Coils Coil 29 63 - -
Mch5g1220 300 Coils Coil 202 222 - -
Mch5g1220 300 SMART SynN_4 24 150 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 FunFam Syntaxin 132 24 153 - -
Mch5g1220 300 Pfam SNARE domain 235 287 IPR000727 -
Mch5g1220 300 Pfam Syntaxin 31 234 IPR006011 GO:0016020(InterPro)
Mch5g1220 300 ProSitePatterns Syntaxin / epimorphin family signature. 205 244 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Mch5g1220 300 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 199 261 IPR000727 -
Mch5g1220 300 Gene3D - 194 292 - -
Mch5g1220 300 Coils Coil 128 148 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1220 K08486 - - csv:101203075 491.5
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch2g0631 Mch-Chr2:4305016 Mch5g1220 Mch-Chr5:12042156 4.28E-71 dispersed
Mch2g0632 Mch-Chr2:4309381 Mch5g1220 Mch-Chr5:12042156 6.33E-103 dispersed
Mch3g1169 Mch-Chr3:14936948 Mch5g1220 Mch-Chr5:12042156 1.08E-80 dispersed
Mch5g1220 Mch-Chr5:12042156 Mch5g1533 Mch-Chr5:16307349 1.01E-77 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0402 . 8 342 SNARE and Associated Proteins AT3G24350 66.1 2.2e-104 375.9
Mch1g0568 . 39 346 SNARE and Associated Proteins AT1G08560 66.2 2.5e-101 365.5
Mch1g1511 . 450 751 SNARE and Associated Proteins AT2G18260 53.7 5.2e-83 304.7
Mch5g1533 . 19 279 SNARE and Associated Proteins AT3G11820 82.4 1.5e-117 419.5
Mch1g0981 . 21 280 SNARE and Associated Proteins AT3G11820 73.5 1.6e-103 372.9
Mch3g1169 . 31 281 SNARE and Associated Proteins AT3G11820 64.9 1.1e-91 333.6
Mch5g1220 . 25 277 SNARE and Associated Proteins AT3G11820 52.6 1.1e-67 253.8
Mch5g1533 . 1 279 SNARE and Associated Proteins AT3G52400 64.6 1.6e-93 339.7
Mch1g0981 . 32 280 SNARE and Associated Proteins AT3G52400 65.9 3.9e-87 318.5
Mch3g1169 . 1 281 SNARE and Associated Proteins AT3G52400 55.7 1.6e-80 296.6
Mch3g1169 . 1 299 SNARE and Associated Proteins AT4G03330 68.5 9.4e-109 390.2
Mch5g1533 . 1 280 SNARE and Associated Proteins AT4G03330 58.4 2.1e-84 309.3
Mch1g0981 . 1 286 SNARE and Associated Proteins AT4G03330 51.9 3.3e-77 285.4
Mch3g1169 . 1 303 SNARE and Associated Proteins AT1G61290 77.9 4.0e-128 454.5
Mch5g1533 . 1 280 SNARE and Associated Proteins AT1G61290 62.4 1.0e-91 333.6
Mch1g0981 . 1 292 SNARE and Associated Proteins AT1G61290 55.5 3.0e-83 305.4
Mch3g1169 . 1 303 SNARE and Associated Proteins AT1G11250 76.9 3.1e-125 444.9
Mch5g1533 . 1 280 SNARE and Associated Proteins AT1G11250 62.9 3.8e-94 341.7
Mch1g0981 . 1 289 SNARE and Associated Proteins AT1G11250 56.4 2.4e-85 312.4
Mch5g1220 . 1 301 SNARE and Associated Proteins AT3G03800 73.4 2.8e-113 405.2
Mch2g0632 . 1 305 SNARE and Associated Proteins AT3G03800 57.5 4.0e-83 305.1
Mch5g1220 . 1 195 SNARE and Associated Proteins AT5G08080 77.5 3.7e-78 288.1
Mch2g0632 . 1 204 SNARE and Associated Proteins AT5G08080 60.3 6.3e-54 207.6
Mch10g1680 . 1 256 SNARE and Associated Proteins AT5G16830 58.8 1.4e-74 276.6
Mch10g1680 . 1 256 SNARE and Associated Proteins AT5G46860 66.0 2.3e-79 292.4
Mch10g1680 . 1 256 SNARE and Associated Proteins AT4G17730 61.7 1.4e-73 273.1
Mch10g1680 . 65 256 SNARE and Associated Proteins AT1G32270 60.9 6.3e-53 204.9
Mch9g1485 . 1 334 SNARE and Associated Proteins AT5G05760 66.3 5.9e-112 401.0
Mch8g0402 . 8 342 SNARE and Associated Proteins AT3G24350 66.1 2.2e-104 375.9
Mch8g2794 . 1 327 SNARE and Associated Proteins AT5G26980 76.5 1.6e-127 452.6
Mch9g0690 . 1 319 SNARE and Associated Proteins AT5G26980 67.9 1.8e-105 379.4
Mch11g1612 . 1 114 SNARE and Associated Proteins AT5G26980 70.4 1.7e-36 150.2
Mch8g2794 . 1 330 SNARE and Associated Proteins AT4G02195 65.4 7.1e-107 384.0
Mch9g0690 . 1 319 SNARE and Associated Proteins AT4G02195 67.1 1.2e-106 383.3
Mch8g2794 . 1 328 SNARE and Associated Proteins AT3G05710 75.4 4.4e-128 454.5
Mch9g0690 . 1 322 SNARE and Associated Proteins AT3G05710 64.2 1.0e-100 363.6
Mch11g1220 . 1 226 SNARE and Associated Proteins AT1G16240 69.2 5.7e-82 300.8
Mch11g1220 . 1 226 SNARE and Associated Proteins AT1G79590 68.4 1.4e-81 299.7
Mch11g1194 . 56 247 SNARE and Associated Proteins AT1G28490 71.4 1.1e-65 246.5
Mch5g1759 . 1 261 SNARE and Associated Proteins AT3G09740 79.5 6.7e-111 397.1
Mch2g0282 . 1 261 SNARE and Associated Proteins AT3G09740 66.3 1.9e-89 325.9
Mch2g0362 . 1 262 SNARE and Associated Proteins AT3G09740 65.7 3.2e-89 325.1
Mch5g1759 . 1 261 SNARE and Associated Proteins AT3G45280 64.0 1.2e-86 316.6
Mch2g0362 . 1 262 SNARE and Associated Proteins AT3G45280 63.4 1.3e-82 303.1
Mch2g0282 . 1 261 SNARE and Associated Proteins AT3G45280 63.6 2.3e-82 302.4
Mch5g1759 . 1 261 SNARE and Associated Proteins AT3G61450 67.8 6.6e-95 344.0
Mch2g0362 . 1 262 SNARE and Associated Proteins AT3G61450 57.2 8.7e-79 290.4
Mch2g0282 . 1 261 SNARE and Associated Proteins AT3G61450 57.4 2.5e-78 288.9
Mch4g2528 . 65 303 SNARE and Associated Proteins AT1G51740 72.4 4.6e-90 327.8
Mch11g1356 . 39 217 SNARE and Associated Proteins AT1G51740 68.5 4.8e-55 211.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001189 1 6 1 1 1 2 3 2 2 2 2 2 3 2 3 3 2 4 3 2 3 1 2 3 3 2 3 8 3 2 77