Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch5g1294 | ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAAATAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGTCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATACCTTCATCTCGAATCCCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTCTGTATAATCAGATAAAGTCAAATAGTTCGACTCTGAACAACAACATCCAGTTTGGTGGTTTAATTAAGCCACTTACATCCACTGATGTAAATCTGCCAACTGCTATCATGGGTTCCCAAACATTGCCGTTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAATTGGGGAGAGTCTAACATGCCAGATACGAGCACAAGAACTGATACCTCCACAGATGACACAGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGGGGCATATGATTCTGGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGTAGGCTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGAGAGCCCGTCAGCAGGGTATATTTATTTCAAGTTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGTGCACTAGCGTTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAACGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCCGAGATCCTAAAGCTTCTTGTAAACCAATTGGAGCCTTTGACTGAGCAGCAATTAATGGGCATCTGCAACCTGCAACAGTTATCACAACAGGCAGAAGATGCTCTCTCGCAAGGAATGGATGCGTTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCTCACCTGCAACTTCGGGATCGTCCGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTAGGAACTCTTGAAGGTTTCCTACGCCAGGCTGATAATCTTCGCCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGCGCACTTCTTGCGATAAACGACTACTTCTCCCGCCTTCGTGCCCTCAGCTCTCTGTGGCTCGCACGGCCAAGAGAGTGA | 1407 | 44.99 | MGSRTVKIGADDINKTVNGMPSFVSSMPTSNNSMGAEGSSIPSSRIPDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTLNNNIQFGGLIKPLTSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNMPDTSTRTDTSTDDTDDKSQRLDKDQGNSLGAYDSGNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGSPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE | 468 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 13803086 | 13816771 | + | MC05g1020 | Mch5g1294 | 688713 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch5g1294 | 468 | Coils | Coil | 202 | 229 | - | - | |
Mch5g1294 | 468 | FunFam | BZIP family transcription factor | 182 | 231 | - | - | |
Mch5g1294 | 468 | PANTHER | TRANSCRIPTION FACTOR TGA9 | 141 | 468 | - | - | |
Mch5g1294 | 468 | ProSiteProfiles | DOG1 domain profile. | 248 | 465 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch5g1294 | 468 | MobiDBLite | consensus disorder prediction | 110 | 144 | - | - | |
Mch5g1294 | 468 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 186 | 201 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1294 | 468 | CDD | bZIP_HBP1b-like | 183 | 235 | - | - | |
Mch5g1294 | 468 | SUPERFAMILY | Leucine zipper domain | 183 | 226 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1294 | 468 | MobiDBLite | consensus disorder prediction | 110 | 185 | - | - | |
Mch5g1294 | 468 | Pfam | Seed dormancy control | 266 | 340 | IPR025422 | GO:0006351(InterPro)|GO:0043565(InterPro) | |
Mch5g1294 | 468 | Gene3D | - | 182 | 233 | - | - | |
Mch5g1294 | 468 | SMART | brlzneu | 179 | 242 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1294 | 468 | MobiDBLite | consensus disorder prediction | 145 | 160 | - | - | |
Mch5g1294 | 468 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 181 | 225 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Mch5g1294 | 468 | Pfam | bZIP transcription factor | 182 | 223 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch4g1324 | Mch-Chr4:16395214 | Mch5g1294 | Mch-Chr5:13803086 | 7.41E-151 | dispersed | |
Mch5g1294 | Mch-Chr5:13803086 | Mch9g1723 | Mch-Chr9:19194764 | 2.08E-163 | dispersed | |
Mch5g1294 | Mch-Chr5:13803086 | Mch3g0661 | Mch-Chr3:11100891 | 1.30E-102 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
43403 | PF14144 | DOG1 | 8.40E-30 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch5g1294 | K14431 | - | csv:101219149 | 837.41 |