Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch5g1294 ATGGGTAGTAGAACAGTGAAGATTGGTGCAGACGATATAAATAAAACGGTGAACGGGATGCCTAGCTTCGTTTCTTCGATGCCCACGTCCAATAATTCCATGGGTGCAGAGGGAAGCTCTATACCTTCATCTCGAATCCCAGACTTAAGAACACTTGAGCAAACTCTTGGATTTCACATAGAAGATGTAGACCTTACTAGAAATCCTCTGTATAATCAGATAAAGTCAAATAGTTCGACTCTGAACAACAACATCCAGTTTGGTGGTTTAATTAAGCCACTTACATCCACTGATGTAAATCTGCCAACTGCTATCATGGGTTCCCAAACATTGCCGTTACAGAAAGAATCAAATCCAAATTTGGTTTCTACATCTAGTGGTCCTCGTGAAAATTGGGGAGAGTCTAACATGCCAGATACGAGCACAAGAACTGATACCTCCACAGATGACACAGATGACAAAAGTCAAAGGCTTGACAAGGATCAAGGAAACTCACTTGGGGCATATGATTCTGGCAACAAATCAAAAGAAAAAACAGCAGATCAGAAGACCTTACGAAGGCTTGCCCAAAATCGTGAAGCTGCTAGAAAAAGTCGTTTAAGGAAAAAAGCGTATGTGCAGCAGCTAGAAAGTAGTAGGCTGAAGCTTACTCAGCTTGAGCAAGAACTCCAGAGAGCCCGTCAGCAGGGTATATTTATTTCAAGTTCTGGAGACCAAGCTCATTCGATGAGTGGAAATGGTGCACTAGCGTTTGATGTAGAATATTCACGTTGGTTAGAGGAGCATAACAGGCTGATAAATGAGCTTAGAGCTGCAGTTAATTCACATGCGGGTGACACTGAACTTCGAACTATTGTTGATAATGTGACTGCACAGTTCGACGATATTTTCAGGTTGAAAGGCATTGCAGCCAAAGCTGATGTGTTCCACATCTTGTCAGGAATGTGGAAGACACCAGCAGAACGGTGTTTCCTGTGGATTGGTGGCTTCCGTTCATCCGAGATCCTAAAGCTTCTTGTAAACCAATTGGAGCCTTTGACTGAGCAGCAATTAATGGGCATCTGCAACCTGCAACAGTTATCACAACAGGCAGAAGATGCTCTCTCGCAAGGAATGGATGCGTTGCAGCAATCCTTGGCTGAAACGTTGGCCAGTGGCTCACCTGCAACTTCGGGATCGTCCGGGAATGTGGCAAATTATATGGGTCAAATGGCCATGGCAATGGGAAAGCTAGGAACTCTTGAAGGTTTCCTACGCCAGGCTGATAATCTTCGCCAACAAACTCTTCAACAAATGCATCGCATATTGACAACCCGTCAATCAGCCCGCGCACTTCTTGCGATAAACGACTACTTCTCCCGCCTTCGTGCCCTCAGCTCTCTGTGGCTCGCACGGCCAAGAGAGTGA 1407 44.99 MGSRTVKIGADDINKTVNGMPSFVSSMPTSNNSMGAEGSSIPSSRIPDLRTLEQTLGFHIEDVDLTRNPLYNQIKSNSSTLNNNIQFGGLIKPLTSTDVNLPTAIMGSQTLPLQKESNPNLVSTSSGPRENWGESNMPDTSTRTDTSTDDTDDKSQRLDKDQGNSLGAYDSGNKSKEKTADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGALAFDVEYSRWLEEHNRLINELRAAVNSHAGDTELRTIVDNVTAQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSEILKLLVNQLEPLTEQQLMGICNLQQLSQQAEDALSQGMDALQQSLAETLASGSPATSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMHRILTTRQSARALLAINDYFSRLRALSSLWLARPRE 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13803086 13816771 + MC05g1020 Mch5g1294 688713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch5g1294 468 Coils Coil 202 229 - -
Mch5g1294 468 FunFam BZIP family transcription factor 182 231 - -
Mch5g1294 468 PANTHER TRANSCRIPTION FACTOR TGA9 141 468 - -
Mch5g1294 468 ProSiteProfiles DOG1 domain profile. 248 465 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch5g1294 468 MobiDBLite consensus disorder prediction 110 144 - -
Mch5g1294 468 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 186 201 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1294 468 CDD bZIP_HBP1b-like 183 235 - -
Mch5g1294 468 SUPERFAMILY Leucine zipper domain 183 226 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1294 468 MobiDBLite consensus disorder prediction 110 185 - -
Mch5g1294 468 Pfam Seed dormancy control 266 340 IPR025422 GO:0006351(InterPro)|GO:0043565(InterPro)
Mch5g1294 468 Gene3D - 182 233 - -
Mch5g1294 468 SMART brlzneu 179 242 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1294 468 MobiDBLite consensus disorder prediction 145 160 - -
Mch5g1294 468 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 181 225 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch5g1294 468 Pfam bZIP transcription factor 182 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch4g1324 Mch-Chr4:16395214 Mch5g1294 Mch-Chr5:13803086 7.41E-151 dispersed
Mch5g1294 Mch-Chr5:13803086 Mch9g1723 Mch-Chr9:19194764 2.08E-163 dispersed
Mch5g1294 Mch-Chr5:13803086 Mch3g0661 Mch-Chr3:11100891 1.30E-102 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
43403 PF14144 DOG1 8.40E-30 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch5g1294 K14431 - csv:101219149 837.41